Contig 002999:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011O20Sequence242013282 (3)733002999 (4)gb|EYU27532.1|6e-15hypothetical protein MIMGU_mgv1a003642mg [Erythranthe guttata]
JMSF015O07Sequence694002999 (4)ref|XP_011095678.1|5e-11PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic
JMSF015P07Sequence475013282 (3)ref|XP_009764172.1|9e-53PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic797002999 (4)ref|XP_009397366.1|2e-22PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic
JMSF048L22Sequence673013282 (3)ref|XP_011030727.1|1e-22PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic692002999 (4)ref|XP_011095678.1|6e-11PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic

Alignment

This contig is upended


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rJMSF015P07+                                                   TCAGAGGGTTGTGTGCGGA
                      ____________________________________________________________
consensus                                                      TCAGAGGGTTGTGTGCGGA
 
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rJMSF011O20+                                                       GAACTGTGATAGGCT
rJMSF015P07+          GGGAATGCTGGAGGCTGCCATCGAGATGCTTAGGATTCTCGAGGCGAACTGTGATAGGCT
                      ____________________________________________________________
consensus             GGGAATGCTGGAGGCTGCCATCGAGATGCTTAGGATTCTCGAGGCGAACTGTGATAGGCT
 
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rJMSF011O20+          CGACATTATGAACTTCAACACTCTAATACTCGGGCTATGCAAATGTGGAAGAACGGATTT
rJMSF015O07+                                    TACTCGGGCTATGCAAATGTGGANGAACGGATTT
rJMSF015P07+          CGACATTATGAACTTCAACACTCTAATACTCGGGCTATGCAAATGTGGAAGAACGGATTT
rJMSF048L22+                                    TACTCGGGCTATGCAAATGTGGAAGAACGGATTT
                      ____________________________________________________________
consensus             CGACATTATGAACTTCAACACTCTAATACTCGGGCTATGCAAATGTGGAAGAACGGATTT
 
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rJMSF011O20+          GTCCTTGGCGATTTACGAGGAGATGATCGAGAAAGGCTATAAGCCAAACGAGAAAACGTA
rJMSF015O07+          GTCATNGGCGATTTACGNGGAGATGATCGAGAAAGGCTATAAGCCAAACGAGAAAACGTA
rJMSF015P07+          GTCATTGGCGATTTACGAGGAGATGATCGAGAAAGGCTATAAGCCAAACGAGAAAACGTA
rJMSF048L22+          GTCATTGGCGATTTACGAGGAGATGATCGAGAAAGGCTATAAGCCAAACGAGAAAACGTA
                      ____________________________________________________________
consensus             GTCATTGGCGATTTACGAGGAGATGATCGAGAAAGGCTATAAGCCAAACGAGAAAACGTA
 
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rJMSF011O20+          CACCATTATAGTCGAAGGGCTCGCCCACGAAGAGGAACTCGAGCTGGCGGGTTTAGTCTT
rJMSF015O07+          CACCATGATAGTCGAAGGGCTCGCCCACGAAGAGGAACTCGAGCTGGCGGGTTTAGTCTT
rJMSF015P07+          CACCATTATAGTCGAAGGGCTCGCCCACGAAGAGGAACTCGAGCTGGCGGGTTTAGTCTT
rJMSF048L22+          CACCATTATAGTCGAAGGGCTCGCCCACGAAGAGGAACTCGAGCTGGCGGGTTTAGTCTT
                      ____________________________________________________________
consensus             CACCATTATAGTCGAAGGGCTCGCCCACGAAGAGGAACTCGAGCTGGCGGGTTTAGTCTT
 
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rJMSF011O20+          GAAAGAGTTGCATTCGAGAGAAGTGATTACTACAATTACATTCCAGCGGTTTTACATGCA
rJMSF015O07+          GAAAGAGTNGCATTCGAGAGAAGTGATTACTACAATTACATTCCAGCGGTTTTACATGCA
rJMSF015P07+          GAAAGAGTTGCATTCGAGAGAAGTGATTACTACAATTACATTCCAGCGGTTTTACATGCA
rJMSF048L22+          GAAAGAGTTGCATTCGAGAGAAGTGATTACTACAATTACATTCCAGCGGTTTTACATGCA
                      ____________________________________________________________
consensus             GAAAGAGTTGCATTCGAGAGAAGTGATTACTACAATTACATTCCAGCGGTTTTACATGCA
 
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rJMSF011O20+          GTATGACCTCGAGCACTCGTCAATATAGCGAAGGTAAATCATCGGGACTTTGCACAAGAT
rJMSF015O07+          GTATGACCTCGAGCACTCGTCAATANAGCGAAGGTAAATCATCGGGACTNTGCACAAGAT
rJMSF015P07+          GTATGACCTCGAGCACTCGTCAATATAGCGAAGGTAAATCATCGGGACTTTGCACAAGAT
rJMSF048L22+          GTATGACCTCGAGCACTCGTCAATATAGCGAAGGTAAATCATCGGGACTTTGCACAAGAT
                      ____________________________________________________________
consensus             GTATGACCTCGAGCACTCGTCAATATAGCGAAGGTAAATCATCGGGACTTTGCACAAGAT
 
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rJMSF011O20+          ACAGAACTGACTTGCCACATTATTGTGAGTAACCTCCAACCGCAACCCTGTTGGTTATTT
rJMSF015O07+          ACAGAACTGNCTTGCCACATTATNGTGAGTAACCTCCANCCGCNACCCTGTTGGNTATNT
rJMSF015P07+          ACAGAACTGACTTGCCACATTATTGTGAGTAACCTCCAACCGCAACCCTGTTGGTTATTT
rJMSF048L22+          ACAGAACTGACTTGCCACATTATTGTGAGTAACCTCCAACCGCAACCCTGTTGGTTATTT
                      ____________________________________________________________
consensus             ACAGAACTGACTTGCCACATTATTGTGAGTAACCTCCAACCGCAACCCTGTTGGTTATTT
 
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rJMSF011O20+          TGTGTATATGTTGATCTCGTTTTCTGATGCGGCCGAGTTGAAATTATTACTACCATAAAA
rJMSF015O07+          NGNGTATATNTTGATCTCGTTTTCTGATGCGGCCGAGTTGAAATTATTACTACCATAANA
rJMSF015P07+          TGTGTATATGTTGATCTCGTTTTCTGATGCGGCCGAGTTGAAATTATTACTACCATAAAA
rJMSF048L22+          TGTGTATATGTTGATCTCGTTTTCTGATGCGGCCGAGTTGAAATTATTACTACCATAAAA
                      ____________________________________________________________
consensus             TGTGTATATGTTGATCTCGTTTTCTGATGCGGCCGAGTTGAAATTATTACTACCATAAAA
 
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rJMSF011O20+          ATGCTTCCTTTATCAGGAATACTGTCAAGGGCATGGATATGATAAGGGCTCAGTTTGACA
rJMSF015O07+          ATGCTTCCTTTATCAGGAATACTGTCAAGGGCATGGATATGATAAGGGCTCAGTNNGACA
rJMSF015P07+          ATGCTTCCTTTATCAGGAATACTGTCAAGGGCATGGATATGATAAGGGCTCAGTTTGACA
rJMSF048L22+          ATGCTTCCTTTATCAGGAATACTGTCAAGGGCATGGATATGATAAGGGCTCAGTTTGACA
                      ____________________________________________________________
consensus             ATGCTTCCTTTATCAGGAATACTGTCAAGGGCATGGATATGATAAGGGCTCAGTTTGACA
 
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rJMSF011O20+          GAGCTTATTTAGGTGCTTATAACTTATTTAAAGCTAAAGTTCCTGTTTGGTATGTATTCT
rJMSF015O07+          GAGCTTATNTAGGTGCTTATNACNTATTTAAAGCTAAAGTTCCTGTNNGGTACGTATTCT
rJMSF015P07+          GAGCTTATTTAGGTGCTTATAACTTATTTAAAGCTAAAGTTCCTGTTTGGTATGTATTCT
rJMSF048L22+          GAGCTTATTTAGGTGCTTATAACTTATTTAAAGCTAAAGTTCCTGTTTGGTATGTATTCT
                      ____________________________________________________________
consensus             GAGCTTATTTAGGTGCTTATAACTTATTTAAAGCTAAAGTTCCTGTTTGGTATGTATTCT
 
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rJMSF011O20+          CCCATTAGTGGTTTTGGTTTTGCTTGAGAAATTGGTAGCAGCTGAGGTGA-AAGATTGTA
rJMSF015O07+          CCCATTAGTGGTNTTGGTTCTGCTTGAGAAATTGGTAGCAGCTGAGGTGACAAGATTGTA
rJMSF015P07+          CCCATTAGTGGTTTTGGTTTTGCTTGAGAAATTGGTAGCAGCTGAGGTGA-AAGATTGTA
rJMSF048L22+          CCCATTAGTGGTTTTGGTTTTGCTTGAGAAATTGGTAGCAGCTGAGGTGA-AAGATTGTA
                      ____________________________________________________________
consensus             CCCATTAGTGGTTTTGGTTTTGCTTGAGAAATTGGTAGCAGCTGAGGTGA-AAGATTGTA
 
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rJMSF011O20+          GATTTGTATTTTGTAGTGTATTTCTTCCCTTGTGCAGATGTGTATTTTATCAAGTCCCTT
rJMSF015O07+          GATTTGTATTCTGTAGTGTATTTCTTCCCTTGNGCAGATGTGTATTTTATCAAGTCCCTT
rJMSF015P07+          GATTTGTATTTTGTAGTGTATTTCTTCCCTTGTGCAGATGTGTATTTTATCAAGTCCCTT
rJMSF048L22+          GATTTGTATTTTGTAGTGTATTTCTTCCCTTGTGCAGATGTGTATTTTATCAAGTCCCTT
                      ____________________________________________________________
consensus             GATTTGTATTTTGTAGTGTATTTCTTCCCTTGTGCAGATGTGTATTTTATCAAGTCCCTT
 
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rJMSF011O20+          CTTTTCATCCTCATATT-ACTGGCTGAAAGATTGTATTTTTAATT               
rJMSF015O07+          CTTTTCATCCTCATANTAACTGGCTGAAAGATTGTATTNTTAATT               
rJMSF015P07+          CTTTTCATCCTCATATT-ACTGGCTGAAAGATTGTATTTTTAATT               
rJMSF048L22+          CTTTTCATCCTCATATT-ACTGGCTGAAAGATTGTATTTTTAATTTACTCAGCAAACTAT
                      ____________________________________________________________
consensus             CTTTTCATCCTCATATT-ACTGGCTGAAAGATTGTATTTTTAATTTACTCAGCAAACTAT