Contig 002997:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS065F03Sequence505002997 (3)ref|XP_010663078.1|2e-36PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X
JMSF006M07Sequence278003701 (4)ref|XP_006356423.1|7e-33PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Solanum tuberosum]447002997 (3)
JMSF048J06Sequence656012179 (2)ref|XP_011071992.1|3e-76PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X748002997 (3)ref|XP_010663078.1|9e-69PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X

Alignment

This contig is upended


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rJMSF048J06+                                         ACAATTCCCAAAAGATACAGATCTTATCG
                      ____________________________________________________________
consensus                                            ACAATTCCCAAAAGATACAGATCTTATCG
 
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rJMSF048J06+          TGGCGTGCCAAAAAGGATTGAGGTCTCTTGCGGCTTGTGAGTTACTGTGCAATGCTGGTT
                      ____________________________________________________________
consensus             TGGCGTGCCAAAAAGGATTGAGGTCTCTTGCGGCTTGTGAGTTACTGTGCAATGCTGGTT
 
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JMFS065F03-                                                           AGGATCTTGAAA
rJMSF048J06+          ACAGTAACCTCTTCTGGGTTCAAGGGGGTTTGGAGAATGCTGACGAAGAGGATCTTGAAA
                      ____________________________________________________________
consensus             ACAGTAACCTCTTCTGGGTTCAAGGGGGTTTGGAGAATGCTGACGAAGAGGATCTTGAAA
 
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JMFS065F03-           GAGAAGGTCCTCAGCCATTTAAGTTTGCAGGAATTGGTGGGCTTTCAGAGTTCCTTGGTT
rJMSF048J06+          GAGAAGGTCCTCAGCCATTTAAGTTTGCAGGAATTGGTGGGCTTTCAGAGTTCCTTGGTT
                      ____________________________________________________________
consensus             GAGAAGGTCCTCAGCCATTTAAGTTTGCAGGAATTGGTGGGCTTTCAGAGTTCCTTGGTT
 
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JMFS065F03-           GGACTGACCAACAACGAGTTGCAGCTGCTAAGGAGGGTTGGGGTTACCGATTAGTCTTCT
rJMSF048J06+          GGACTGACCAACAACGAGTTGCAGCTGCTAAGGAGGGTTGGGGTTACCGATTAGTCTTCT
                      ____________________________________________________________
consensus             GGACTGACCAACAACGAGTTGCAGCTGCTAAGGAGGGTTGGGGTTACCGATTAGTCTTCT
 
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JMFS065F03-           CTGCCCGCTTGGTTGGAGTCTTTCTTGTTGCTGATGCACTGTTTATCGGAGCACAAAGAG
rJMSF006M07+                                          GATGCACTGTTTATCGGAGCACAAAGAG
rJMSF048J06+          CTGCCCGCTTGGTTGGAGTCTTTCTTGTTGCTGATGCACTGTTTATCGGAGCACAAAGAG
                      ____________________________________________________________
consensus             CTGCCCGCTTGGTTGGAGTCTTTCTTGTTGCTGATGCACTGTTTATCGGAGCACAAAGAG
 
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JMFS065F03-           TGGGCCAATACATTCAAGATTTAAGGACTCATTAAGCAGTGTTGCCTTTGTTTATTGTCT
rJMSF006M07+          TGGGCCAATACATTCAAGATNTAAGGACTCATTAAGCAGTGTCGCCTTTGTTTATTGTCT
rJMSF048J06+          TGGGCCAATACATTCAAGATTTAAGGACTCATTAAGCAGTGTTGCCTTTGTTTATTGTCT
                      ____________________________________________________________
consensus             TGGGCCAATACATTCAAGATTTAAGGACTCATTAAGCAGTGTTGCCTTTGTTTATTGTCT
 
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JMFS065F03-           TGAAGCAAGAGGGCCGGTATCATTAAAATTTAAGGTATCAGTGAGGATCCTTGCGCCATT
rJMSF006M07+          TGAAGCAAGAGGGCCGGNATCATTAAAATTTAAGGTATCAGTGAGGATCCTTGCGCCATT
rJMSF048J06+          TGAAGCAAGAGGGCCGGTATCATTAAAATTTAAGGTATCAGTGAGGATCCTTGCGCCATT
                      ____________________________________________________________
consensus             TGAAGCAAGAGGGCCGGTATCATTAAAATTTAAGGTATCAGTGAGGATCCTTGCGCCATT
 
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JMFS065F03-           CTAGATACTTACCAATGAAGCACAAAAGAAATGGCATTTTCTCAAGTTCCTCTGTTGAGA
rJMSF006M07+          CTAGATACTTACCAATGAAGCACAAAAGAAATGGCATTTTCTCAAGTTCCTCTGTTGAGA
rJMSF048J06+          CTAGATACTTACCAATGAAGCACAAAAGAAATGGCATTTTCTCAAGTTCCTCTGTTGAGA
                      ____________________________________________________________
consensus             CTAGATACTTACCAATGAAGCACAAAAGAAATGGCATTTTCTCAAGTTCCTCTGTTGAGA
 
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JMFS065F03-           CTGAAACGAAGAAGGCACTTTACTTTTGAAAACCCATACAGAAATGTATAGGACTTCTCT
rJMSF006M07+          CTGAAACGAAGAAGGCACTTTACTTTTGAAAACCCATACAGAAATGTATAGGACTTCTCT
rJMSF048J06+          CTGAAACGAAGAAGGCACTTTACTTTTGAAAACCCATACAGAAATGTATAGGACTTCTCT
                      ____________________________________________________________
consensus             CTGAAACGAAGAAGGCACTTTACTTTTGAAAACCCATACAGAAATGTATAGGACTTCTCT
 
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JMFS065F03-           -CTGCATCCAAAACCTTTATTTGCTGAATGCCTTTATGAAATGAGTGTAGATGATTTCTT
rJMSF006M07+          CCTGCATCCAAAACCTTTATTTGCTGAATGCCTTTATGANATGAGTNTAGATGATTTCCT
rJMSF048J06+          -CTGCATCCAAAACCTTTATTTGCTGAATGCCTTTATGAAATGAGTGTAGATGATTTCTT
                      ____________________________________________________________
consensus             -CTGCATCCAAAACCTTTATTTGCTGAATGCCTTTATGAAATGAGTGTAGATGATTTCTT
 
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JMFS065F03-           TTTTCCT                                                     
rJMSF006M07+          TTTTCCTCCCAAAGACGGCATGCCANGANCTCCACATCTAACTTACTGTTTTCATTGTCC
rJMSF048J06+          TTTTCCTTCCAAAGACGGCATGCCATGATTTCCACATCTAACTTACTGTTTTCATTGTCC
                      ____________________________________________________________
consensus             TTTTCCTTCCAAAGACGGCATGCCATGATTTCCACATCTAACTTACTGTTTTCATTGTCC
 
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rJMSF006M07+          TTGTTTCTTNGAATTTGTCCATTGTACTTNTACTAGCTAACTTTCCTCTACGTTAATGT 
rJMSF048J06+          TTGTTTCTTTGAATTTGTTTATTGTACTTCTACTAGCTAACTTTCCTCTACGTTAATGTT
                      ____________________________________________________________
consensus             TTGTTTCTTTGAATTTGTTTATTGTACTTCTACTAGCTAACTTTCCTCTACGTTAATGTT