| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004I10 | Sequence | 498 | 002996 (9) | gb|KHG03179.1| | 8e-60 | 60S ribosomal L37a [Gossypium arboreum] | 467 | 002996 (9) | gb|KHG03179.1| | 5e-60 | 60S ribosomal L37a [Gossypium arboreum] |
| JMFF049K03 | Sequence | 306 | 002996 (9) | gb|KHG03179.1| | 3e-50 | 60S ribosomal L37a [Gossypium arboreum] | 295 | 002996 (9) | gb|KJB64889.1| | 2e-25 | hypothetical protein B456_010G072500 [Gossypium raimondii] |
| JMFN001E06 | Sequence | 530 | 002996 (9) | gb|KHG03179.1| | 2e-59 | 60S ribosomal L37a [Gossypium arboreum] | |||||
| JMFN001G04 | Sequence | 519 | 002996 (9) | gb|KHG03179.1| | 2e-59 | 60S ribosomal L37a [Gossypium arboreum] | |||||
| JMFN005P04 | Sequence | 599 | 002996 (9) | gb|KHG03179.1| | 5e-59 | 60S ribosomal L37a [Gossypium arboreum] | |||||
| JMSF048I04 | Sequence | 537 | 002996 (9) | gb|KHG03179.1| | 2e-59 | 60S ribosomal L37a [Gossypium arboreum] | 337 | 002996 (9) | gb|KDO85434.1| | 7e-42 | hypothetical protein CISIN_1g045338mg [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
JMFN005P04+ CGAATCCGGATTCGATCGGATCTGC
____________________________________________________________
consensus CGAATCCGGATTCGATCGGATCTGC
. : . : . : . : . : . :
JMFN005P04+ AGCGACGGCGTAATTGACCGGATCTGAGAATTCCCGGCGTATGGCTGTGCTCACAGTCTC
____________________________________________________________
consensus AGCGACGGCGTAATTGACCGGATCTGAGAATTCCCGGCGTATGGCTGTGCTCACAGTCTC
. : . : . : . : . : . :
JMFN005P04+ GGAAAAACTGTGAATCCTGAGAGAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXXXAATT
JMFN001E06+ AATT
rJMFF049K03- GTCATAATT
JMFF004I10+ TTGTCATAATT
JMFN001G04+ AATT
JMSF048I04+ AATT
____________________________________________________________
consensus GGAAAAACTGTGAATCCTGAGAGAACTAGTCTCGAGNNNNNNNNNNNNNTTGTCATAATT
. : . : . : . : . : . :
JMFN005P04+ GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTCTGAAAATAACCCAAAAAATG
JMFN001E06+ GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTCTGAAAATAACCCAAAAAATG
rJMFF049K03- GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTCTGAAAATAACCCAAAAAATG
JMFF004I10+ GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTGTGAAAATAACCCAAAAAATG
JMFN001G04+ GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTCTGAAAATAACCCAAAAAATG
rJMFF004I10- TTGAGGCAGAAGATTTGTCATAGTTGTGTGAAAATAACCCAAAAAATG
JMSF048I04+ GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTCTGAAAATAACCCAAAAAATG
____________________________________________________________
consensus GTTTAAAATCCATTGAGGCAGAAGATTTGTCATAGTTGTCTGAAAATAACCCAAAAAATG
. : . : . : . : . : . :
JMFN005P04+ CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
JMFN001E06+ CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
rJMFF049K03- CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
JMFF004I10+ CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
JMFN001G04+ CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
rJMFF004I10- CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
JMSF048I04+ CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
____________________________________________________________
consensus CAAGCAAAATGGAAAAATGACTACATAAGTGATGAGTCTAATCTCAAAATTCAGACAGAA
. : . : . : . : . : . :
JMFN005P04+ ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
JMFN001E06+ ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
rJMFF049K03- ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
JMFF004I10+ ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
JMFN001G04+ ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
JMFF049K03+ TCACCGT
rJMFF004I10- ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
JMSF048I04+ ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
rJMSF048I04- GCTCCCNGAGTCTTCNGATNGGGCTTCTCACCGT
____________________________________________________________
consensus ACTTGTGATGGCTTAACTCTCAGTTTGCTCCCTGAGTCTTCTGATTGTGCTTCTCACCGT
. : . : . : . : . : . :
JMFN005P04+ CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
JMFN001E06+ CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
rJMFF049K03- CAAGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
JMFF004I10+ CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
JMFN001G04+ CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
JMFF049K03+ CAAGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
rJMFF004I10- CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
JMSF048I04+ CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
rJMSF048I04- CNNGGCACTAGCAGNGTTCANGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
____________________________________________________________
consensus CACGGCACTAGCAGTGTTCAAGGTATATGCCCCGCCCGCTTTGACCTTCCCACAATCCTT
. : . : . : . : . : . :
JMFN005P04+ GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
JMFN001E06+ GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
rJMFF049K03- GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCA
JMFF004I10+ GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
JMFN001G04+ GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
JMFF049K03+ GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
rJMFF004I10- GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
JMSF048I04+ GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
rJMSF048I04- GCAGCCCCATATTCCTACGGCCTTTCTCTTCACNGCATACTTCCCACAAAACTCGNAAAA
____________________________________________________________
consensus GCAGCCCCATATTCCTACGGCCTTTCTCTTCACTGCATACTTCCCACAAAACTCGCAGAA
. : . : . : . : . : . :
JMFN005P04+ GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
JMFN001E06+ GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
JMFF004I10+ GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
JMFN001G04+ GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
JMFF049K03+ GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
rJMFF004I10- GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
JMSF048I04+ GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
rJMSF048I04- GTACTTGCNGNGCNGGCTGACCTCCATCTTTTTAATCNGTTTACGGANACTANCNCCATA
____________________________________________________________
consensus GTACTTGCTGTGCTGGCTGACCTCCATCTTTTTAATCTGTTTACGGAGACTAGCACCATA
. : . : . : . : . : . :
JMFN005P04+ GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
JMFN001E06+ GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
JMFF004I10+ GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
JMFN001G04+ GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
JMFF049K03+ GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
rJMFF004I10- GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
JMSF048I04+ GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
rJMSF048I04- GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGNCCTCTTAGNCATTTTCNCTGA
____________________________________________________________
consensus GCGGGTACCATATTTTCCAACAATACCGGCCTTCTTCGTCCTCTTAGTCATTTTCGCTGA
. : . : . : . : . : . :
JMFN005P04+ TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGG
JMFN001E06+ TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAA
JMFF004I10+ TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAAGTTGACAGAGGCG
JMFN001G04+ TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAAG
JMFF049K03+ TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAAGTTGACAGAGGCG
rJMFF004I10- TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAAGTTGACAGAGGCG
JMSF048I04+ TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAAGTTGACAGAGGCG
rJMSF048I04- TCGGNGANGGAGGCTCGGCCGCNAAAANAAGGGGGAATCCAAGTTGACANAGGCGTANCC
____________________________________________________________
consensus TCGGTGATGGAGGCTCGGCCGCGAAAAGAAGGGGGAATCCAAGTTGACAGAGGCGTANCC