Contig 002995:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023P07Sequence479005291 (7)ref|XP_009800228.1|3e-81PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]656002995 (5)ref|XP_009800228.1|5e-108PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF021O21Sequence668005291 (7)ref|XP_009800228.1|3e-116PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]721002995 (5)ref|XP_009800228.1|2e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF036B04Sequence651005291 (7)ref|XP_009800228.1|4e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]680002995 (5)ref|XP_009800228.1|6e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF036E12Sequence651005291 (7)ref|XP_009800228.1|4e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]752002995 (5)ref|XP_009800228.1|2e-112PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF048G04Sequence685005291 (7)ref|XP_009800228.1|2e-115PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]714002995 (5)ref|XP_009800228.1|6e-108PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF036E12+ ACTACCAAAAGGACAG
                      ____________________________________________________________
consensus ACTACCAAAAGGACAG
 
. : . : . : . : . : . :
rJMSF036E12+ TCCTTCATCTTTTAGTCTTCTCCTCGTTTCTCAATATTTCCACAGTTTCTATTTCATCTA
                      ____________________________________________________________
consensus TCCTTCATCTTTTAGTCTTCTCCTCGTTTCTCAATATTTCCACAGTTTCTATTTCATCTA
 
. : . : . : . : . : . :
rJMSF036E12+ CGGCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMSF036B04+ GCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMFF023P07+ GCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMSF021O21+ GCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMSF048G04+ TTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
                      ____________________________________________________________
consensus CGGCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
 
. : . : . : . : . : . :
rJMSF036E12+ ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMSF036B04+ ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMFF023P07+ ATGATTCTGANCCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMSF021O21+ ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMSF048G04+ ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
                      ____________________________________________________________
consensus ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
 
. : . : . : . : . : . :
rJMSF036E12+ TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMSF036B04+ TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMFF023P07+ TCGTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMSF021O21+ TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMSF048G04+ TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
                      ____________________________________________________________
consensus TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
 
. : . : . : . : . : . :
rJMSF036E12+ GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMSF036B04+ GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMFF023P07+ GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMSF021O21+ GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMSF048G04+ GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
                      ____________________________________________________________
consensus GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
 
. : . : . : . : . : . :
rJMSF036E12+ GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMSF036B04+ GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMFF023P07+ GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMSF021O21+ GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMSF048G04+ GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
                      ____________________________________________________________
consensus GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
 
. : . : . : . : . : . :
rJMSF036E12+ TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMSF036B04+ TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMFF023P07+ TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMSF021O21+ TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMSF048G04+ TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
                      ____________________________________________________________
consensus TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
 
. : . : . : . : . : . :
rJMSF036E12+ CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMSF036B04+ CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMFF023P07+ CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMSF021O21+ CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMSF048G04+ CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
                      ____________________________________________________________
consensus CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
 
. : . : . : . : . : . :
rJMSF036E12+ TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMSF036B04+ TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMFF023P07+ TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMSF021O21+ TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMSF048G04+ TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
                      ____________________________________________________________
consensus TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
 
. : . : . : . : . : . :
rJMSF036E12+ GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMSF036B04+ GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMFF023P07+ GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMSF021O21+ GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMSF048G04+ GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
                      ____________________________________________________________
consensus GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
 
. : . : . : . : . : . :
rJMSF036E12+ CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMSF036B04+ CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMFF023P07+ CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMSF021O21+ CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMSF048G04+ CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
                      ____________________________________________________________
consensus CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
 
. : . : . : . : . : . :
rJMSF036E12+ TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACCTTTTTTTAATTTA
rJMSF036B04+ TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
rJMFF023P07+ TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTT
rJMSF021O21+ TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
rJMSF048G04+ TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
                      ____________________________________________________________
consensus TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
 
. : . : . : . : . : . :
rJMSF036E12+ ATTGCTATTTCAGCT
rJMSF036B04+ ATTGCTATTTCAGCT
rJMSF021O21+ ATTGCTATTTCAGCTTGGATCTGTTAGTGGAAAAAAGAGAGAGATTGTAATGCAGCTTC
rJMSF048G04+ ATTGCTATTTCAGCTTGGATCTGTTAGTGGAAAAAAGAGAGAGATTGTAATGCAGCTTCT
                      ____________________________________________________________
consensus ATTGCTATTTCAGCTTGGATCTGTTAGTGGAAAAAAGAGAGAGATTGTAATGCAGCTTCT