Contig 002995:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023P07Sequence479005291 (7)ref|XP_009800228.1|3e-81PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]656002995 (5)ref|XP_009800228.1|5e-108PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF021O21Sequence668005291 (7)ref|XP_009800228.1|3e-116PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]721002995 (5)ref|XP_009800228.1|2e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF036B04Sequence651005291 (7)ref|XP_009800228.1|4e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]680002995 (5)ref|XP_009800228.1|6e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF036E12Sequence651005291 (7)ref|XP_009800228.1|4e-110PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]752002995 (5)ref|XP_009800228.1|2e-112PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
JMSF048G04Sequence685005291 (7)ref|XP_009800228.1|2e-115PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]714002995 (5)ref|XP_009800228.1|6e-108PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+                                                      ACTACCAAAAGGACAG
                      ____________________________________________________________
consensus                                                         ACTACCAAAAGGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          TCCTTCATCTTTTAGTCTTCTCCTCGTTTCTCAATATTTCCACAGTTTCTATTTCATCTA
                      ____________________________________________________________
consensus             TCCTTCATCTTTTAGTCTTCTCCTCGTTTCTCAATATTTCCACAGTTTCTATTTCATCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          CGGCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMSF036B04+            GCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMFF023P07+            GCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMSF021O21+            GCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
rJMSF048G04+               TTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
                      ____________________________________________________________
consensus             CGGCGTTCTCAATTTGTTCAGGTCTTTGGCAATAGCCCAGACGAGACAGCTTATTATAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMSF036B04+          ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMFF023P07+          ATGATTCTGANCCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMSF021O21+          ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
rJMSF048G04+          ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
                      ____________________________________________________________
consensus             ATGATTCTGAACCGGGAAAATGTTTCAAATTCTGTTGTGATGATTCAACCCTCTTTAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMSF036B04+          TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMFF023P07+          TCGTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMSF021O21+          TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
rJMSF048G04+          TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
                      ____________________________________________________________
consensus             TCCTACTCCTTCCATTCTGTCCCCGAACCGGTTCTTCTTGATGTGGGCTCAATTGCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMSF036B04+          GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMFF023P07+          GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMSF021O21+          GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
rJMSF048G04+          GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
                      ____________________________________________________________
consensus             GATAGAATTCTTCTTTTGGATTCTTACTTCACTATTGTTGTATTTCATGGATCAACCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMSF036B04+          GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMFF023P07+          GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMSF021O21+          GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
rJMSF048G04+          GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
                      ____________________________________________________________
consensus             GCTCAATGGCGAAAAGCTGGATACCATGAACAGCCTGAACACCAGGCATTTGCTCAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMSF036B04+          TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMFF023P07+          TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMSF021O21+          TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
rJMSF048G04+          TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
                      ____________________________________________________________
consensus             TTGCAAACACCTCGGGAGGATGCAGAATCAATTATACGAGACAGATTCCCAGTGCCTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMSF036B04+          CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMFF023P07+          CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMSF021O21+          CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
rJMSF048G04+          CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
                      ____________________________________________________________
consensus             CTGGTCATTTGCGATCAGCATGGATCCCAGGCTCGGTTTTTGCTTGCGAAGTTGAATCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMSF036B04+          TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMFF023P07+          TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMSF021O21+          TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
rJMSF048G04+          TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
                      ____________________________________________________________
consensus             TCGGCCACATACAACTCAGATGCCCCTCCTGTTCCCGGAGGTGATATCATATTCACCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMSF036B04+          GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMFF023P07+          GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMSF021O21+          GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
rJMSF048G04+          GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
                      ____________________________________________________________
consensus             GACGTTAGTTTTGAAGTGTTTTTGGATCATCTTCAGCGGTTGGCAGTTCAATAGAAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMSF036B04+          CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMFF023P07+          CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMSF021O21+          CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
rJMSF048G04+          CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
                      ____________________________________________________________
consensus             CTATTCTTACATTACATCTCCAAGAGGTTAGCAGTTATGATACAAACCCAACCGATTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACCTTTTTTTAATTTA
rJMSF036B04+          TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
rJMFF023P07+          TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTT 
rJMSF021O21+          TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
rJMSF048G04+          TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
                      ____________________________________________________________
consensus             TAATATTTTTGTTTGAATTGACTGTGTACAGTAATACATAAAAGACC-TTTTTTAATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036E12+          ATTGCTATTTCAGCT                                             
rJMSF036B04+          ATTGCTATTTCAGCT                                             
rJMSF021O21+          ATTGCTATTTCAGCTTGGATCTGTTAGTGGAAAAAAGAGAGAGATTGTAATGCAGCTTC 
rJMSF048G04+          ATTGCTATTTCAGCTTGGATCTGTTAGTGGAAAAAAGAGAGAGATTGTAATGCAGCTTCT
                      ____________________________________________________________
consensus             ATTGCTATTTCAGCTTGGATCTGTTAGTGGAAAAAAGAGAGAGATTGTAATGCAGCTTCT