| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008K10 | Sequence | 431 | 003564 (11) | ref|XP_010505114.1| | 5e-28 | PREDICTED: serine carboxypeptidase-like 9 isoform X3 [Camelina sativa] | 740 | 002993 (3) | ref|XP_006363405.1| | 3e-40 | PREDICTED: probable calcium-binding protein CML45-like [Solanum tuberosum] |
| JMSF011O05 | Sequence | 249 | 003564 (11) | ref|NP_973517.1| | 6e-08 | serine carboxypeptidase-like 9 [Arabidopsis thaliana] gb|AEC07396.1| serine carb | 769 | 002993 (3) | ref|XP_009376279.1| | 1e-28 | PREDICTED: probable calcium-binding protein CML45 [Pyrus x bretschneideri] |
| JMSF048F06 | Sequence | 665 | 016889 | ref|XP_009771130.1| | 2e-26 | PREDICTED: serine carboxypeptidase-like 13 isoform X3 [Nicotiana sylvestris] | 780 | 002993 (3) | ref|XP_009376279.1| | 1e-28 | PREDICTED: probable calcium-binding protein CML45 [Pyrus x bretschneideri] |
This contig is upended
. : . : . : . : . : . :
rJMSF008K10+ TCTTTGNTGCAATGACGGAAGAAATTGTTCCAA
____________________________________________________________
consensus TCTTTGNTGCAATGACGGAAGAAATTGTTCCAA
. : . : . : . : . : . :
rJMSF008K10+ TCCCTCTCCCAATCCATGGTCTGGTCGTTTTCATCATGCTCTCCATAGTCTTCGAGTGGG
____________________________________________________________
consensus TCCCTCTCCCAATCCATGGTCTGGTCGTTTTCATCATGCTCTCCATAGTCTTCGAGTGGG
. : . : . : . : . : . :
rJMSF008K10+ GGAGAAAAGCTTTCAGATTTATACTAGCGGCCATGGAATCGAACCAGGAGACCCAGAAAA
rJMSF011O05+ TTATACTAGCGGCCATGGAATCGAACCAGGAGACCCAGAAAA
rJMSF048F06+ TTATACTAGCGGCCATGGAATCGAACCAGGAGACCCAGAAAA
____________________________________________________________
consensus GGAGAAAAGCTTTCAGATTTATACTAGCGGCCATGGAATCGAACCAGGAGACCCAGAAAA
. : . : . : . : . : . :
rJMSF008K10+ AAATTCATGATTTTGAGCCGTCTACAAGGAAGAGGATCGATGATGGCAGAGAAGAAGTGG
rJMSF011O05+ AAATTCATGATTTTGAGCCGTCTACAAGGAAGAGGATCGATGATGGCAGAGAAGAAGTGG
rJMSF048F06+ AAATTCATGATTTTGAGCCGTCTACAAGGAAGAGGATCGATGATGGCAGAGAAGAAGTGG
____________________________________________________________
consensus AAATTCATGATTTTGAGCCGTCTACAAGGAAGAGGATCGATGATGGCAGAGAAGAAGTGG
. : . : . : . : . : . :
rJMSF008K10+ AGATGGTTTTCGGCAGGCTGGGGATTTTTTGCCACTCCGAAGCTGCAAAGATTCAAGAGC
rJMSF011O05+ AGATGGTTTTCGGCAGGCTGGGGATTTTTTGCCACTCCGAAGCTGCAAAGATTCAAGAGC
rJMSF048F06+ AGATGGTTTTCGGCAGGCTGGGGATTTTTTGCCACTCCGAAGCTGCAAAGATTCAAGAGC
____________________________________________________________
consensus AGATGGTTTTCGGCAGGCTGGGGATTTTTTGCCACTCCGAAGCTGCAAAGATTCAAGAGC
. : . : . : . : . : . :
rJMSF008K10+ GGTTCGACTCGGAAGACCTGTCGCCATAGATGACGAGGTCAAAGGTGCATGCTTTCGATG
rJMSF011O05+ GGTTCGACTCGGAAGACCTGTCGCCATAGATGACGAGGTCAAAGGTGCATGCTTTCGATG
rJMSF048F06+ GGTTCGACTCGGAAGACCTGTCGCCATAGATGACGAGGTCAAAGGTGCATGCTTTCGATG
____________________________________________________________
consensus GGTTCGACTCGGAAGACCTGTCGCCATAGATGACGAGGTCAAAGGTGCATGCTTTCGATG
. : . : . : . : . : . :
rJMSF008K10+ TGTTTGATGAGAACAGAGATGGGTTTATTGATGAGAGGGAGCTGCAGAGAGTTCAGTGCC
rJMSF011O05+ TGTTTGATGAGAACAGAGATGGGTTTATTGATGAGAGGGAGCTGCAGAGAGTTCAGTGCC
rJMSF048F06+ TGTTTGATGAGAACAGAGATGGGTTTATTGATGAGAGGGAGCTGCAGAGAGTTCAGTGCC
____________________________________________________________
consensus TGTTTGATGAGAACAGAGATGGGTTTATTGATGAGAGGGAGCTGCAGAGAGTTCAGTGCC
. : . : . : . : . : . :
rJMSF008K10+ TTCTGGGAATGAAGGAAGGGTCAGAGGTGCAGAGGTGCGAAGATATGATCAGAGTGTTCG
rJMSF011O05+ TTCTGGGAATGAAGGAAGGGTCAGAGGTGCAGAGGTGCGAAGATATGATCAGAGTGTTCG
rJMSF048F06+ TTCTGGGAATGAAGGAAGGGTCAGAGGTGCAGAGGTGCGAAGATATGATCAGAGTGTTCG
____________________________________________________________
consensus TTCTGGGAATGAAGGAAGGGTCAGAGGTGCAGAGGTGCGAAGATATGATCAGAGTGTTCG
. : . : . : . : . : . :
rJMSF008K10+ ATGAAAATGGCGATGGGAAGATAGATTTCCATGAATTCTCAAAGCTTATTTGAATTCGTA
rJMSF011O05+ ATGAAAATGGCGATGGGAAGATAGATTTCCATGAATTCTCAAAGCTTATTTGAATTCGTA
rJMSF048F06+ ATGAAAATGGCGATGGGAAGATAGATTTCCATGAATTCTCAAAGCTTATTTGAATTCGTA
____________________________________________________________
consensus ATGAAAATGGCGATGGGAAGATAGATTTCCATGAATTCTCAAAGCTTATTTGAATTCGTA
. : . : . : . : . : . :
rJMSF008K10+ CTACTTCGGATTGAGACAATCAGTGACACTATCTCGCTGCTTTCCACACCATCTCTCTGC
rJMSF011O05+ CTACTTCGGATTGAGACAATCAGTGACACTATCTCGCTGCTTTCCACACCATCTCTCTGC
rJMSF048F06+ CTACTTCGGATTGAGACAATCAGTGACACTATCTCGCTGCTTTCCACACCATCTCTCTGC
____________________________________________________________
consensus CTACTTCGGATTGAGACAATCAGTGACACTATCTCGCTGCTTTCCACACCATCTCTCTGC
. : . : . : . : . : . :
rJMSF008K10+ TTGTTTGTTCATTTGTTTCTGACATACAAAAGGATAATAATATATCACGATGCTCTTCTT
rJMSF011O05+ TTGTTTGTTCATTTGTTTCTGACATACAAAAGGATAATAATATATCACGATGCTCTTCTT
rJMSF048F06+ TTGTTTGTTCATTTGTTTCTGACATACAAAAGGATAATAATATATCACGATGCTCTTCTT
____________________________________________________________
consensus TTGTTTGTTCATTTGTTTCTGACATACAAAAGGATAATAATATATCACGATGCTCTTCTT
. : . : . : . : . : . :
rJMSF008K10+ TTATTTATGTAAATCCCTTTAGGCTAGAATGCAAGAGATGAAGGAAAAGGGACACCAAGT
rJMSF011O05+ TTATTTATGTAAATCCCTTTAGGCTAGAATGCAAGAGATGAAGGAAAAGGGACA-CAAGT
rJMSF048F06+ TTATTTATGTAAATCCCTTTAGGCTAGAATGCAAGAGATGAAGGAAAAGGGACA-CAAGT
____________________________________________________________
consensus TTATTTATGTAAATCCCTTTAGGCTAGAATGCAAGAGATGAAGGAAAAGGGACA-CAAGT
. : . : . : . : . : . :
rJMSF008K10+ ATTTGGGTAATGGGGATGCAGATTCAC
rJMSF011O05+ ATTTGGGTAATGGGGATGCAGATTCACATGTGTGCAAAGTGTGTTTTGAATCTCCTACAA
rJMSF048F06+ ATTTGGGTAATGGGGATGCAGATTCACATGTGTGCAAAGTGTGTTTTGAATCTCCTACAA
____________________________________________________________
consensus ATTTGGGTAATGGGGATGCAGATTCACATGTGTGCAAAGTGTGTTTTGAATCTCCTACAA
. : . : . : . : . : . :
rJMSF011O05+ CAGCAATGCTTCTTCCTTGCCGTCATTTTTGCT
rJMSF048F06+ CAGCAATGCTTCTTCCTTGCCGTCATTTTTGCTGTAACTTGTCTCTAGATTTTAATTTAT
____________________________________________________________
consensus CAGCAATGCTTCTTCCTTGCCGTCATTTTTGCTGTAACTTGTCTCTAGATTTTAATTTAT
. : . : . : . : . : . :
rJMSF048F06+ TTTCTTTTCTTTCTTGTGGTATTCATAGTTAAGCCATTTTGATTCATGTAAATATGTCTG
____________________________________________________________
consensus TTTCTTTTCTTTCTTGTGGTATTCATAGTTAAGCCATTTTGATTCATGTAAATATGTCTG