| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF018O06 | Sequence | 482 | 005138 (3) | gb|AEQ27744.1| | 4e-24 | receptor-like protein [Malus domestica] | 749 | 002992 (3) | ref|XP_009772428.1| | 4e-46 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| JMSF029C12 | Sequence | 663 | 005138 (3) | ref|XP_011080440.1| | 2e-43 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 | 669 | 002992 (3) | ref|XP_009772428.1| | 4e-39 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| JMSF048D01 | Sequence | 743 | 005138 (3) | ref|XP_007220752.1| | 1e-52 | hypothetical protein PRUPE_ppa025491mg [Prunus persica] gb|EMJ21951.1| hypotheti | 750 | 002992 (3) | ref|XP_009772428.1| | 4e-36 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
This contig is upended
. : . : . : . : . : . :
rJMSF018O06+ CATCATCGGTAGCATTCCGA
____________________________________________________________
consensus CATCATCGGTAGCATTCCGA
. : . : . : . : . : . :
rJMSF029C12+ TCTTAACAATCTCACGTCAATGGTCGAGCAGAATGAGATTGATTTTGGAGAAATGG
rJMSF018O06+ GGTGTCTTAACAATCTCACGTCAATGGTTGAGCAGAATGAGATTGATTTTGGAGAAATGG
____________________________________________________________
consensus GGTGTCTTAACAATCTCACGTCAATGGTTGAGCAGAATGAGATTGATTTTGGAGAAATGG
. : . : . : . : . : . :
rJMSF029C12+ ATACTTTAACAAAAATATTCTTGGGAGAAAGTGCTACAGTGATCACTAAAGGGCAAGAGT
rJMSF018O06+ ATACTTTAACAAAAATATTCTTGGGAGAAAGTGCTACAGTGATCACTAAAGGGCAAGAGT
____________________________________________________________
consensus ATACTTTAACAAAAATATTCTTGGGAGAAAGTGCTACAGTGATCACTAAAGGGCAAGAGT
. : . : . : . : . : . :
rJMSF029C12+ ACCAATACTCTACCATTATATTGGTGTTGTTTGCAAGTTTTGATCTTTCAAACAACAATT
rJMSF018O06+ ACCAATACTCTACCATTATATTGGTGTTGTTTGCAAGTTTTGATCTTTCAAACAACAATT
rJMSF048D01+ CAAGTTTTGATCTTTCCNACAACCATT
____________________________________________________________
consensus ACCAATACTCTACCATTATATTGGTGTTGTTTGCAAGTTTTGATCTTTCAAACAACAATT
. : . : . : . : . : . :
rJMSF029C12+ TTTCTGGGGAAATACCTGTGGAGCTGACCACTTTACTGGAATTAAGATCCTTGAACTTAT
rJMSF018O06+ TTTCTGGGGAAATACCTGTGGAGCTGACCACTTTACTGGAATTAAGATCCTTGAACTTAT
rJMSF048D01+ TTTCTGGGGAAATACCTGTGGAACTTACCACTTTAGTGGAATTAAGATTCTTGAACTTAT
____________________________________________________________
consensus TTTCTGGGGAAATACCTGTGGAGCTGACCACTTTACTGGAATTAAGATCCTTGAACTTAT
. : . : . : . : . : . :
rJMSF029C12+ CAAGAAATAAGTTGACAGGAAACATTCCCAAGGAAATAGGAAACATGAAGCAATTAGAAT
rJMSF018O06+ CAAGAAATAAGTTGACAGGAAACATTCCCAAGGAAATAGGAAACATGAAGCAATTAGAAT
rJMSF048D01+ CAGGAAATAAGTTGACAGGAAACATTCCTAAGAATATAGGAGACATGAAGCAATTAGAAT
____________________________________________________________
consensus CAAGAAATAAGTTGACAGGAAACATTCCCAAGGAAATAGGAAACATGAAGCAATTAGAAT
. : . : . : . : . : . :
rJMSF029C12+ CCATTGATCTATCAAGAAACCATCTTTCTGGAGAAATTCCCTACAGTCTCTCAAATCTCA
rJMSF018O06+ CCATTGATCTATCAAGAAACCATCTTTCTGGAGAAATTCCCTACAGTCTCTCAAATCTCA
rJMSF048D01+ CCATTGATCTATCAAGAAATCATCTTTCTGGAGAAATCCCCTACAGCTTCTCAAATCTAA
____________________________________________________________
consensus CCATTGATCTATCAAGAAACCATCTTTCTGGAGAAATTCCCTACAGTCTCTCAAATCTCA
. : . : . : . : . : . :
rJMSF029C12+ ACTTTCTGAGTTACTTGAATTTGTCTTATAACAATCTGTCTGGGAAGATCCCTACTGGTA
rJMSF018O06+ ACTTTCTGAGTTACTTGAATTTGTCTTATAACAATCTGTCTGGGAAGATCCCTACTGGTA
rJMSF048D01+ ACTTTCTGAGTTACTTGAATTTGTCTTATAACAATCTGTCTGGGAAGATCCCTACTGGTA
____________________________________________________________
consensus ACTTTCTGAGTTACTTGAATTTGTCTTATAACAATCTGTCTGGGAAGATCCCTACTGGTA
. : . : . : . : . : . :
rJMSF029C12+ CTCAACTTCAAAGCTTCAATGCATCTTGTTATGTTGGTAACAATCTTTGTGGGCCTCCTC
rJMSF018O06+ CTCAACTTCAAAGCTTCAATGCATCTTGTTATGTTGGTAACAATCTTTGTGGGCCTCCTC
rJMSF048D01+ CTCAGCTTCAAAGCTTCAATGCATCTTGTTATGTTGGTAACAATCTTTGTGGGCCTCCTC
____________________________________________________________
consensus CTCAACTTCAAAGCTTCAATGCATCTTGTTATGTTGGTAACAATCTTTGTGGGCCTCCTC
. : . : . : . : . : . :
rJMSF029C12+ TCCTTGGATGTAGCA------------ATGATGATGATGTTCCTGATGAAGAAGAAGACA
rJMSF018O06+ TCCTTGGATGTAGCA------------ATGATGATGATGTTCCTGATGAAGAAGAAGACA
rJMSF048D01+ TCTTTGAATGTAGCAATGAATCCAATGATGATGATGCTGTTCCTGATGAAGAAGAAGACA
____________________________________________________________
consensus TCCTTGGATGTAGCA------------ATGATGATGATGTTCCTGATGAAGAAGAAGACA
. : . : . : . : . : . :
rJMSF029C12+ GAGGAGATGATT---TTGAGGCAAAGTGGTTTTATATTAGCATGGCTATAGGATTTGTTG
rJMSF018O06+ GAGGAGATGATT---TTGAGGCAAAGTGGTTTTATATTAGCATGGCTATAGGATTTGTTG
rJMSF048D01+ GAGGAGATGATTCTGATGAGGCAAAGTGGTTTTATATTAGCATGGCTATAGGATTTGTTG
____________________________________________________________
consensus GAGGAGATGATT---TTGAGGCAAAGTGGTTTTATATTAGCATGGCTATAGGATTTGTTG
. : . : . : . : . : . :
rJMSF029C12+ TGGGATGGTGGGGCATCTGGGGACCTTTGTTTGTTGTGAAATCTTGGAG
rJMSF018O06+ TGGGATGGTGGGGCATCTGGGGACCTTTGTTTGTTGTGAAATCTTGGAG
rJMSF048D01+ TGGGATGGTGGGGCATCTGGGGACCTTTGTTTGTTGTGAAATCTTGGAGACAAGCCTATT
____________________________________________________________
consensus TGGGATGGTGGGGCATCTGGGGACCTTTGTTTGTTGTGAAATCTTGGAGACAAGCCTATT
. : . : . : . : . : . :
rJMSF048D01+ TTCAATTTTTAGATGTTAAGTTGAAGTATCTTTTTGGGTGGTTTGGACTGGGATGGATAT
____________________________________________________________
consensus TTCAATTTTTAGATGTTAAGTTGAAGTATCTTTTTGGGTGGTTTGGACTGGGATGGATAT
. : . : . : . : . : . :
rJMSF048D01+ TACTTCCGAACAAAAGGCACCGTTCTGATAATTCTCGTGACAACCGACCAGAGGAGGCAA
____________________________________________________________
consensus TACTTCCGAACAAAAGGCACCGTTCTGATAATTCTCGTGACAACCGACCAGAGGAGGCAA
. : . : . : . : . : . :
rJMSF048D01+ GCGGGACGCGAGTGAGGATTCATCAAATGCAAGACCGACTGGGCCCCCAAGTCTAGAGTT
____________________________________________________________
consensus GCGGGACGCGAGTGAGGATTCATCAAATGCAAGACCGACTGGGCCCCCAAGTCTAGAGTT
. : . : . : . : . : . :
rJMSF048D01+ GGATTCTCACGGTATATTTGTACTTTTTTGAACTCTTTTCTTGTATTATTTGAAAAATAT
____________________________________________________________
consensus GGATTCTCACGGTATATTTGTACTTTTTTGAACTCTTTTCTTGTATTATTTGAAAAATAT