Contig 002982:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF046J03-                                          GAGATTGGTAAGCTCACAATAAAATAACA
                      ____________________________________________________________
consensus                                            GAGATTGGTAAGCTCACAATAAAATAACA
 
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JMSF046J03-           CGCTCAAGATGCCAACTGCCAACAACACCTACTGCTTCAAACTAATTTATTATTATTTAT
                      ____________________________________________________________
consensus             CGCTCAAGATGCCAACTGCCAACAACACCTACTGCTTCAAACTAATTTATTATTATTTAT
 
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JMSF046J03-           ACATATATATAAATGCCAAAAGTTGTTTTGATTTTTCCAGGCGATGAACGCTAAATCCAT
JMSF049G01-                                                        GAACGCTAAATCCAT
                      ____________________________________________________________
consensus             ACATATATATAAATGCCAAAAGTTGTTTTGATTTTTCCAGGCGATGAACGCTAAATCCAT
 
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JMSF046J03-           GGTGGAGCTTCTCTTCGCTGCGGCGGCGCCGACTTCCCGAGGTAAGTGACTCAACTCGCT
JMSF049G01-           GGTGGAGCTTCTCTTCGCTGCGGCGGCGCCGACTTCCCGAGGTAAGTGACTCAACTCGCT
                      ____________________________________________________________
consensus             GGTGGAGCTTCTCTTCGCTGCGGCGGCGCCGACTTCCCGAGGTAAGTGACTCAACTCGCT
 
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JMSF046J03-           CGTCTTTCGACTTCTGCGATCGGAGTATTGCGCCGACGGCGGCGATTCGAGAGAGGTAGT
JMSF049G01-           CGTCTTTCGACTTCTGCGATCGGAGTATTGCGCCGACGGCGGCGATTCGAGAGAGGTAGT
                      ____________________________________________________________
consensus             CGTCTTTCGACTTCTGCGATCGGAGTATTGCGCCGACGGCGGCGATTCGAGAGAGGTAGT
 
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JMSF046J03-           GAGCAGGGAGCAGGGAGGATGAACGCGACTGGGAACGGCGGTGTGGAGAGAGAGTACATA
JMSF049G01-           GAGCAGGGAGCAGGGAGGATGAACGCGACTGGGAACGGCGGTGTGGAGAGAGAGTACATA
rJMSF049G01+                       GGAGGATGAACGCGACTGGNAACGGCGGTGTGGAGAGAGAGTACATA
                      ____________________________________________________________
consensus             GAGCAGGGAGCAGGGAGGATGAACGCGACTGGGAACGGCGGTGTGGAGAGAGAGTACATA
 
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JMSF046J03-           ACGAAACACCACAGGCACGAGACGGCGGAGAATCAATGCAGTTCGTTTCTGATCAAGCAC
JMSF049G01-           ACGAAACACCACAGGCACGAGACGGCGGAGAATCAATGCAGTTCGTTTCTGATCAAGCAC
rJMSF049G01+          ACGAAACACCACAGGCACGAGACGGCGGAGAATCAATGCAGTTCGTTTCTGATCAAGCAC
                      ____________________________________________________________
consensus             ACGAAACACCACAGGCACGAGACGGCGGAGAATCAATGCAGTTCGTTTCTGATCAAGCAC
 
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JMSF046J03-           ATCAGAGCACCTGTTAACCTCGTTTGGTCATTGGTTAGGAGGTTTGATCAGCCACAGAAA
JMSF049G01-           ATCAGAGCACCTGTTAACCTCGTTTGGTCATTGGTTAGGAGGTTTGATCAGCCACAGAAA
rJMSF050G01+                                         TGGTTAGGAGGTTTGATCAGCCACAGAAA
rJMSF049G01+          ATCAGAGCACCTGTTAACCTCGTTTGGTCATTGGTTAGGAGGTTTGATCAGCCACAGAAA
                      ____________________________________________________________
consensus             ATCAGAGCACCTGTTAACCTCGTTTGGTCATTGGTTAGGAGGTTTGATCAGCCACAGAAA
 
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JMSF046J03-           TACAAGCCCTTTATTAGCAGGTGCATTAGTCAGGGAAGTCTTGAGATTGGTAGTCTTAGA
JMSF049G01-           TACAAGCCCTTTATTAGCAGGTGCATTAGTCAGGGAAGTCTTGAGATTGGTAGTCTTAGA
rJMSF050G01+          TACAAGCCCTTTATTAGCAGGTGCATTAGTCAGGGAAGTCTTGAGATTGGTAGTCTTAGA
rJMSF049G01+          TACAAGCCCTTTATTAGCAGGTGCATTAGTCAGGGAAGTCTTGAGATTGGTAGTCTTAGA
                      ____________________________________________________________
consensus             TACAAGCCCTTTATTAGCAGGTGCATTAGTCAGGGAAGTCTTGAGATTGGTAGTCTTAGA
 
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JMSF046J03-           GAAGTTGATGTCAAGTCGGGTCTTCCTGCCACAACAAGCACAGAAAGGTTGGAGCTTCTT
JMSF049G01-           GAAGTTGATGTCAAGTCGGGTCTTCCTGCCACAACAAGCACAGAAAGGTTGGAGCTTCTT
rJMSF050G01+          GAAGTTGATGTCAAGTCGGGTCTTCCTGCCACAACAAGCACAGAAAGGTTGGAGCTTCTT
rJMSF049G01+          GAAGTTGATGTCAAGTCGGGTCTTCCTGCCACAACAAGCACAGAAAGGTTGGAGCTTCTT
rJMSF046J03+                                                                   CTT
                      ____________________________________________________________
consensus             GAAGTTGATGTCAAGTCGGGTCTTCCTGCCACAACAAGCACAGAAAGGTTGGAGCTTCTT
 
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JMSF046J03-           GATGATGATGAGCATATACTCAGTGTGAGGATTGTTGGGGGGGATCACCGGCTTCGGAAC
JMSF049G01-           GATGATGATGAGCATATACTCAGTGTGAGGATTGTTGGGGGGGATCACCGGCTTCGGAAC
rJMSF050G01+          GATGATGATGAGCATATACTCAGTGTGAGGATTGTTGGGGGGGATCACCGGCTTCGGAAC
rJMSF049G01+          GATGATGATGAGCATATACTCAGTGTGAGGATTGTTGGGGGGGATCACCGGCTTCGGAAC
rJMSF046J03+          GATGATGATGAGCATATACTCAGTGTGAGGATTGTTGGGGGGGATCACCGGCTTCGGAAC
                      ____________________________________________________________
consensus             GATGATGATGAGCATATACTCAGTGTGAGGATTGTTGGGGGGGATCACCGGCTTCGGAAC
 
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JMSF046J03-           TATTCCTCAGTCATATCTGTCCATCCAGAGGTCATTGACGGAAGACCTGGAACTGTGGTG
JMSF049G01-           TATTCCTCAGTCATATCTGTCCATCCAGAGGTCATTGACGGAAGACCTGGAACTGTGGTG
rJMSF050G01+          TATTCCTCAGTCATATCTGTCCATCCAGAGGTCATTGACGGAAGACCTGGAACTGTGGTG
rJMSF049G01+          TATTCCTCAGTCATATCTGTCCATCCAGAGGTCATTGACGGAAGACCTGGAACTGTGGTG
rJMSF046J03+          TATTCCTCAGTCATATCTGTCCATCCAGAGGTCATTGACGGAAGACCTGGAACTGTGGTG
                      ____________________________________________________________
consensus             TATTCCTCAGTCATATCTGTCCATCCAGAGGTCATTGACGGAAGACCTGGAACTGTGGTG
 
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JMSF046J03-           ATAGAATCATTTGTGGTAGATGTGCCAGAAGGAAACACTATCGACGAAACCTGCTACTTT
JMSF049G01-           ATAGAATCATTTGTGGTAGATGTGCCAGAAGGAAACACTATCGACGAAACCTGCTACTTT
rJMSF050G01+          ATAGAATCATTTGTGGTAGATGTGCCAGAAGGAAACACTATCGACGAAACCTGCTACTTT
rJMSF049G01+          ATAGAATCATTTGTGGTAGATGTGCCAGAAGGAAACACTATCGACGAAACCTGCTACTTT
rJMSF046J03+          ATAGAATCATTTGTGGTAGATGTGCCAGAAGGAAACACTATCGACGAAACCTGCTACTTT
                      ____________________________________________________________
consensus             ATAGAATCATTTGTGGTAGATGTGCCAGAAGGAAACACTATCGACGAAACCTGCTACTTT
 
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JMSF046J03-           GTTGAAGCATTAATCA                                            
JMSF049G01-           GTTGAAGCATTAATCAAATGCAATCTGAAATCTCTTGCGGATG                 
rJMSF050G01+          GTTGAAGCATTAATCAAATGCAATCTGAAATCTCTTGCGGATGTTTCAGAGCGGCTTGCT
rJMSF049G01+          GTTGAAGCATTAATCAAATGCAATCTGAAATCTCTTGCGGATGTTTCAGAGCGGCTTGCT
rJMSF046J03+          GTTGAAGCATTAATCAAATGCAATCTGAAATCTCTTGCGGATGTTTCAGAGCGGCTTGCT
                      ____________________________________________________________
consensus             GTTGAAGCATTAATCAAATGCAATCTGAAATCTCTTGCGGATGTTTCAGAGCGGCTTGCT
 
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rJMSF050G01+          GTGCAGGGCAGGACAGAACCCATAGATCCTGTGTAAAGAAAGAGCCAGAGCCCAGAGGCT
rJMSF049G01+          GTGCAGGGCAGGACAGAACCCATAGATCCTGTGTAAAGAAAGAGCCAGAGCCCAGAGGCT
rJMSF046J03+          GTGCAGGGCAGGACAGAACCCATAGATCCTGTGTAAAGAAAGAGCCAGAGCCCAGAGGCT
                      ____________________________________________________________
consensus             GTGCAGGGCAGGACAGAACCCATAGATCCTGTGTAAAGAAAGAGCCAGAGCCCAGAGGCT
 
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rJMSF050G01+          AAATTCACCAAGGATGAAGCTTCATTAAGACTTTTCAATCTCTTCTGGGGCTTTGGAGGT
rJMSF049G01+          AAATTCACCAAGGATGAAGCTTCATTAAGACTTTTCAATCTCTTCTGGGGCTTTGGAGGT
rJMSF046J03+          AAATTCACCAAGGATGAAGCTTCATTAAGACTTTTCAATCTCTTCTGGGGCTTTGGAGGT
                      ____________________________________________________________
consensus             AAATTCACCAAGGATGAAGCTTCATTAAGACTTTTCAATCTCTTCTGGGGCTTTGGAGGT
 
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rJMSF050G01+          GGTACACCATTCATAGCTACTCTTCCATATTTTGCCACTTTTTACTGCTTCTTTCTTTAG
rJMSF049G01+          GGTACACCATTCATAGCTACTCTTCCATATTTTGCCACTTTTTACTGCTTCTTTCTTTAG
rJMSF046J03+          GGTACACCATTCATAGCTACTCTTCCATATTTTGCCACTTTTTACTGCTTCTTTCTTTAG
                      ____________________________________________________________
consensus             GGTACACCATTCATAGCTACTCTTCCATATTTTGCCACTTTTTACTGCTTCTTTCTTTAG
 
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rJMSF050G01+          CTGTGTTGCTTAGCTNTCAAGTCCGAGGTCATGTCCGACTTCNTTCATGTTACCTAGGTG
rJMSF049G01+          CTGTGTTGCTTAGCTTTCAAGTCCGAGGTCATGTCCGACTTCCTTCATGTT-CCTAGGTG
rJMSF046J03+          CTGTGTTGCTTAGCTTTCAAGTCCGAGGTCATGTCCGACTTCCTTCATGTT-CCTAGGTG
                      ____________________________________________________________
consensus             CTGTGTTGCTTAGCTTTCAAGTCCGAGGTCATGTCCGACTTCCTTCATGTT-CCTAGGTG
 
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rJMSF050G01+          TTCAAATACCGCANGAACACAAC                                     
rJMSF049G01+          TTCAAATACCGCATGAACACAAC                                     
rJMSF046J03+          TTCAAATACCGCATGAACACAACATTTCTAATCATTTTAGACACCCAATTGAATGACAAG
                      ____________________________________________________________
consensus             TTCAAATACCGCATGAACACAACATTTCTAATCATTTTAGACACCCAATTGAATGACAAG
 
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rJMSF046J03+          TACAAACATCATCACAATCTGTCTCTTTTTTTTAAAAAAATTTATGTAACTGATTGTGTA
                      ____________________________________________________________
consensus             TACAAACATCATCACAATCTGTCTCTTTTTTTTAAAAAAATTTATGTAACTGATTGTGTA
 
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rJMSF046J03+          TGAAAGACATGCTTCACAGACACATACATGGTTCATGCTTGTTGAATTATCTGTGAAAAG
                      ____________________________________________________________
consensus             TGAAAGACATGCTTCACAGACACATACATGGTTCATGCTTGTTGAATTATCTGTGAAAAG
 
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rJMSF046J03+          CTTCTTTTTTTTCTCTCTTTTATGTGGCACTTCTAGCTGGCTTTTTAAACCTGCAACCGT
                      ____________________________________________________________
consensus             CTTCTTTTTTTTCTCTCTTTTATGTGGCACTTCTAGCTGGCTTTTTAAACCTGCAACCGT