Contig 002980:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029D14Sequence656002980 (5)ref|XP_003631869.1|300PREDICTED: uncharacterized protein LOC100261651 [Vitis vinifera]692002980 (5)ref|XP_006345819.1|306PREDICTED: uncharacterized protein LOC102593451 [Solanum tuberosum]
JMSF045A05Sequence745008044 (3)ref|XP_010321332.1|2e-11PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101259936 [Solanum l673002980 (5)ref|XP_006345819.1|189PREDICTED: uncharacterized protein LOC102593451 [Solanum tuberosum]
JMSF046C05Sequence784008044 (3)ref|XP_010321332.1|2e-11PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101259936 [Solanum l673002980 (5)ref|XP_006345819.1|189PREDICTED: uncharacterized protein LOC102593451 [Solanum tuberosum]
JMSF048A05Sequence575008044 (3)ref|XP_010321332.1|7e-12PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101259936 [Solanum l719002980 (5)ref|XP_006345819.1|246PREDICTED: uncharacterized protein LOC102593451 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF029D14-              GTGTAGCAGTAGTAGTAGATGGCTTTACTCATACCTCCTTCTTCGCCGATTCCATTC
                      ____________________________________________________________
consensus                GTGTAGCAGTAGTAGTAGATGGCTTTACTCATACCTCCTTCTTCGCCGATTCCATTC
 
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JMSF029D14-           CCATCTCTGGGTTTCAAAGCGCACAACTTTCCTTTCATCTTTAAGTCAACGTCTGCTAGA
                      ____________________________________________________________
consensus             CCATCTCTGGGTTTCAAAGCGCACAACTTTCCTTTCATCTTTAAGTCAACGTCTGCTAGA
 
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JMSF029D14-           ACCGCTCTCCGTATTACCAGGAGCACTGCCTCCTCAACAATGGCGACTGTCGCCCAAAGG
                      ____________________________________________________________
consensus             ACCGCTCTCCGTATTACCAGGAGCACTGCCTCCTCAACAATGGCGACTGTCGCCCAAAGG
 
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JMSF029D14-           AAGCTGCCGATTCTGCTCTTTGACGTTATGGACACCCTTGTTCGCGACCCATTTTATCAG
                      ____________________________________________________________
consensus             AAGCTGCCGATTCTGCTCTTTGACGTTATGGACACCCTTGTTCGCGACCCATTTTATCAG
 
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JMSF029D14-           GACGTCCCCGCCTTCTTCCGAATGCCTATGAAGGAATTACTAGAAATCAAGCATCCTACT
                      ____________________________________________________________
consensus             GACGTCCCCGCCTTCTTCCGAATGCCTATGAAGGAATTACTAGAAATCAAGCATCCTACT
 
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JMSF029D14-           GCATGGATTGAGTTCGAAAAGGGCCTTATTGATGAGGTAGAGTTAGAAAGAAAGTTTTTT
                      ____________________________________________________________
consensus             GCATGGATTGAGTTCGAAAAGGGCCTTATTGATGAGGTAGAGTTAGAAAGAAAGTTTTTT
 
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JMSF029D14-           AAAGATGGGAGATCATTTGATATGGAAGGCCTCAAAAACTGTATGAGAAAAGGATATTCT
                      ____________________________________________________________
consensus             AAAGATGGGAGATCATTTGATATGGAAGGCCTCAAAAACTGTATGAGAAAAGGATATTCT
 
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JMSF029D14-           TACATCGAAGGTGTTGAGGAATTACTTAGTGTGTTAAAGGCAAATGGCTATGAAATCCAT
                      ____________________________________________________________
consensus             TACATCGAAGGTGTTGAGGAATTACTTAGTGTGTTAAAGGCAAATGGCTATGAAATCCAT
 
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JMSF029D14-           GCTTTCACAAACTATCCTATTTGGTACAAAATGATCGAAGAGAAGTTAAAACTTTCAAAA
rJMSF029D14+                                GGTACAAAATGATCGAAGAGAAGTTAAAACTTTCAAAA
rJMSF048A05+                                GGTACAAAATGATCGAAGAGAAGTTAAAACTTTCAAAA
rJMSF045A05+                                GGTACAAAATGATCGAAGAGAAGTTAAAACTTTCAAAA
rJMSF046C05+                                GGTACAAAATGATCGAAGAGAAGTTAAAACTTTCAAAA
                      ____________________________________________________________
consensus             GCTTTCACAAACTATCCTATTTGGTACAAAATGATCGAAGAGAAGTTAAAACTTTCAAAA
 
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JMSF029D14-           TACTTATCTTGGACTTTCTGTTCCTGTATAATGGGAAAGCGGAAGCCTGAACTTGATTTT
rJMSF029D14+          TACTTATCTTGGACTTTCTGTTCCTGTATAATGGGAAAGCGGAAGCCTGAACTTGATTTT
rJMSF048A05+          TACTTATCTTGGACTTTCTGTTCCTGTATAATGGGAAAGCGGAAGCCTGAACTTGATTTT
rJMSF045A05+          TACTTATCTTGGACTTTCTGTTCCTGTATAATGGGAAAGCGGAAGCCTGAACTTGATTTT
rJMSF046C05+          TACTTATCTTGGACTTTCTGTTCCTGTATAATGGGAAAGCGGAAGCCTGAACTTGATTTT
                      ____________________________________________________________
consensus             TACTTATCTTGGACTTTCTGTTCCTGTATAATGGGAAAGCGGAAGCCTGAACTTGATTTT
 
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JMSF029D14-           TACTTGGACGTTCTGAAACATCTCGATGTTGAGCCAGCCAGCTGTATCTTTGTTGATGA 
rJMSF029D14+          TACTTGGACGTTCTGAAACATCTCGATGTTGAGCCAGCCAGCTGTATCTTTGTTGATGAT
rJMSF048A05+          TACTTGGACGTTCTGAAACATCTCGATGTTGAGCCAGCCAGCTGTATCTTTGTTGATGAT
rJMSF045A05+          TACTTGGACGTTCTGAAACATCTCGATGTTGAGCCAGCCAGCTGTATCTTTGTTGATGAT
rJMSF046C05+          TACTTGGACGTTCTGAAACATCTCGATGTTGAGCCAGCCAGCTGTATCTTTGTTGATGAT
                      ____________________________________________________________
consensus             TACTTGGACGTTCTGAAACATCTCGATGTTGAGCCAGCCAGCTGTATCTTTGTTGATGAT
 
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rJMSF029D14+          AGACAAAAGAATGTTGAAGCTGCCATTGAAGCTGGTTTGAGAGGTCTTCAGTTCAAGAGC
rJMSF048A05+          AGACAAAAGAATGTTGAAGCTGCCATTGAAGCTGGTTTGAGAGGTCTTCAGTTCAAGAGC
rJMSF045A05+          AGACAAAAGAATGTTGAAGCTGCCATTGAAGCTGGTTTGAGAGGTCTTCAGTTCAAGAGC
rJMSF046C05+          AGACAAAAGAATGTTGAAGCTGCCATTGAAGCTGGTTTGAGAGGTCTTCAGTTCAAGAGC
                      ____________________________________________________________
consensus             AGACAAAAGAATGTTGAAGCTGCCATTGAAGCTGGTTTGAGAGGTCTTCAGTTCAAGAGC
 
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rJMSF029D14+          GCGGATGTGCTGCGCAAGGACTTATCGCGTCTTGGTGTTGACATTCAAACAAGCGAAAGT
rJMSF048A05+          GCGGATGTGCTGCGCAAGGACTTATCGCGTCTTGGTGTTGACATTCAAACAAGCGAAAGT
rJMSF045A05+          GCGGATGTGCTGCGCAAGGACTTATCGCGTCTTGGTGTTGACATTCAAACAAGCGAAAGT
rJMSF046C05+          GCGGATGTGCTGCGCAAGGACTTATCGCGTCTTGGTGTTGACATTCAAACAAGCGAAAGT
                      ____________________________________________________________
consensus             GCGGATGTGCTGCGCAAGGACTTATCGCGTCTTGGTGTTGACATTCAAACAAGCGAAAGT
 
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rJMSF029D14+          AAAGATCTGGCTGAGTGTTCTTAAGCCGCAAATCTCCCCCGATTTCAGAGCCATAATGTA
rJMSF048A05+          AAAGATCTGGCTGAGTGTTCTTAAGCCGCAAATCTCCCCCGATTTCAGAGCCATAATGTA
rJMSF045A05+          AAAGATCTGGCTGAGTGTTCTTAAGCCGCAAATCTCCCCCGATTTCAGAGCCATAATGTA
rJMSF046C05+          AAAGATCTGGCTGAGTGTTCTTAAGCCGCAAATCTCCCCCGATTTCAGAGCCATAATGTA
                      ____________________________________________________________
consensus             AAAGATCTGGCTGAGTGTTCTTAAGCCGCAAATCTCCCCCGATTTCAGAGCCATAATGTA
 
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rJMSF029D14+          TGTATAGTTTGGCTCATAAAGGGGAAAAATGGACATTTTGAAAAAGATGTTTGACAGAGA
rJMSF048A05+          TGTATAGTTTGGCTCATAAAGGGGAAAAATGGACATTTTGAAAAAGATGTTTGACAGAGA
rJMSF045A05+          TGTATAGTTTGGCTCATAAAGGGGAAAAATGGACATTTTGAAAAAGATGTTTGACAGAGA
rJMSF046C05+          TGTATAGTTTGGCTCATAAAGGGGAAAAATGGACATTTTGAAAAAGATGTTTGACAGAGA
                      ____________________________________________________________
consensus             TGTATAGTTTGGCTCATAAAGGGGAAAAATGGACATTTTGAAAAAGATGTTTGACAGAGA
 
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rJMSF029D14+          AGGCAAGATGATTCAAACAATAAGCTGTTCATGTTCAGCAAAATTG              
rJMSF048A05+          AGGCAAGATGATTCAAACAATAAGCTGTTCATGTTCAGCAAAATTGTGTTC         
rJMSF045A05+          AGGCAAGATGATTCAAACAATAAGCTGTTCATGTTCAGCAAAATTGTGTTCAAAGTTCAG
rJMSF046C05+          AGGCAAGATGATTCAAACAATAAGCTGTTCATGTTCAGCAAAATTGTGTTCAAAGTTCAG
                      ____________________________________________________________
consensus             AGGCAAGATGATTCAAACAATAAGCTGTTCATGTTCAGCAAAATTGTGTTCAAAGTTCAG
 
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rJMSF045A05+          CATATTTCAAGTGCAGAGCAACTATTTATAGTTGTTTGGTTCCATTTAC           
rJMSF046C05+          CATATTTCAAGTGCAGAGCAACTATTTATAGTTGTTTGGTTCCATTTACCAGTTCCATTG
                      ____________________________________________________________
consensus             CATATTTCAAGTGCAGAGCAACTATTTATAGTTGTTTGGTTCCATTTACCAGTTCCATTG