| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF022M07 | Sequence | 626 | 013548 (4) | ref|XP_009599649.1| | 3e-12 | PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis] | 766 | 002979 (3) | ref|XP_006338736.1| | 1e-56 | PREDICTED: RING finger protein 10-like [Solanum tuberosum] |
| JMSF045G10 | Sequence | 768 | 013548 (4) | ref|XP_009599649.1| | 1e-42 | PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis] | 819 | 002979 (3) | ref|XP_006338736.1| | 3e-55 | PREDICTED: RING finger protein 10-like [Solanum tuberosum] |
| JMSF048G08 | Sequence | 631 | 013548 (4) | ref|XP_009599649.1| | 3e-12 | PREDICTED: RING finger protein 10 [Nicotiana tomentosiformis] | 737 | 002979 (3) | ref|XP_006338736.1| | 4e-52 | PREDICTED: RING finger protein 10-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF022M07+ TCTCTTTGACAACATTATTTCAGCTTTGTGAAATTGATCTGCTCA
rJMSF048G08+ TTGTGAAATTGATCTGCTCA
rJMSF045G10+ TGACAACATTATTTCAGCTTTGTGAAATTGATCTGCTCA
____________________________________________________________
consensus TCTCTTTGACAACATTATTTCAGCTTTGTGAAATTGATCTGCTCA
. : . : . : . : . : . :
rJMSF022M07+ AGATGTTGCCTGCTGATGCCCTCTCTCCATTTATGACTGAAATTAAGAATAGGGAAAAGC
rJMSF048G08+ AGATGTTGCCTGCTGATGCCCTCTCTCCATTTATGACTGAAATTAAGAATAGGGAAAAGC
rJMSF045G10+ AGATGTTGCCTGCTGATGCCCTCTCTCCATTTATGACTGAAATTAAGAATAGGGAAAAGC
____________________________________________________________
consensus AGATGTTGCCTGCTGATGCCCTCTCTCCATTTATGACTGAAATTAAGAATAGGGAAAAGC
. : . : . : . : . : . :
rJMSF022M07+ AAAGGAAGCGGGTTGCTAGGATGGAGCATCAGGAGAAAATGAAGGCAGAAACTACTGGGT
rJMSF048G08+ AAAGGAAGCGGGTTGCTAGGATGGAGCATCAGGAGAAAATGAAGGCAGAAACTACTGGGT
rJMSF045G10+ AAAGGAAGCGGGTTGCTAGGATGGAGCATCAGGAGAAAATGAAGGCAGAAACTACTGGGT
____________________________________________________________
consensus AAAGGAAGCGGGTTGCTAGGATGGAGCATCAGGAGAAAATGAAGGCAGAAACTACTGGGT
. : . : . : . : . : . :
rJMSF022M07+ TCCAGTATGCTCCTTTATCCTATAACCTGGCAGATACTTCTTATGTTGGCCAGCCTGCAT
rJMSF048G08+ TCCAGTATGCTCCTTTATCCTATAACCTGGCAGATACTTCTTATGTTGGCCAGCCTGCAT
rJMSF045G10+ TCCAGTATGCTCCTTTATCCTATAACCTGGCAGATACTTCTTATGTTGGCCAGCCTGCAT
____________________________________________________________
consensus TCCAGTATGCTCCTTTATCCTATAACCTGGCAGATACTTCTTATGTTGGCCAGCCTGCAT
. : . : . : . : . : . :
rJMSF022M07+ TCTCCAATGATGACTTTGAAGCATTAGGAAACTCAGCTGTAATATCATCAAGCCCCCCAG
rJMSF048G08+ TCTCCAATGATGACTTTGAAGCATTAGGAAACTCAGCTGTAATATCATCAAGCCCCCCAG
rJMSF045G10+ TCTCCAATGATGACTTTGAAGCATTAGGAAACTCAGCTGTAATATCATCAAGCCCCCCAG
____________________________________________________________
consensus TCTCCAATGATGACTTTGAAGCATTAGGAAACTCAGCTGTAATATCATCAAGCCCCCCAG
. : . : . : . : . : . :
rJMSF022M07+ CAGCAGTTGCAGGTAAGCTGCTCTTCTCAAATGTTGCAAGGCTTGGTTTTGCTGCTGGAC
rJMSF048G08+ CAGCAGTTGCAGGTAAGCTGCTCTTCTCAAATGTTGCAAGGCTTGGTTTTGCTGCTGGAC
rJMSF045G10+ CAGCAGTTGCAGGTAAGCTGCTCTTCTCAAATGTTGCAAGGCTTGGTTTTGCTGCTGGAC
____________________________________________________________
consensus CAGCAGTTGCAGGTAAGCTGCTCTTCTCAAATGTTGCAAGGCTTGGTTTTGCTGCTGGAC
. : . : . : . : . : . :
rJMSF022M07+ ATGATTCTCCGGCATTGAAGTTGGAGGATACTCTTCCCAAGACTGAGGCATCACAAAATA
rJMSF048G08+ ATGATTCTCCGGCATTGAAGTTGGAGGATACTCTTCCCAAGACTGAGGCATCACAAAATA
rJMSF045G10+ ATGATTCTCCGGCATTGAAGTTGGAGGATACTCTTCCCAAGACTGAGGCATCACAAAATA
____________________________________________________________
consensus ATGATTCTCCGGCATTGAAGTTGGAGGATACTCTTCCCAAGACTGAGGCATCACAAAATA
. : . : . : . : . : . :
rJMSF022M07+ CTTCTGGTGAAACTGGGCGAAAGCATGCTGGTACATTGTCATTTGCTAATGTGACATCTA
rJMSF048G08+ CTTCTGGTGAAACTGGGCGAAAGCATGCTGGTACATTGTCATTTGCTAATGTGACATCTA
rJMSF045G10+ CTTCTGGTGAAACTGGGCGAAAGCATGCTGGTACATTGTCATTTGCTAATGTGACATCTA
____________________________________________________________
consensus CTTCTGGTGAAACTGGGCGAAAGCATGCTGGTACATTGTCATTTGCTAATGTGACATCTA
. : . : . : . : . : . :
rJMSF022M07+ GAGCTAAAACGGTTGAGGACCCCAATGTCTCCAAGGCAAGTGAAGTGGGGAAGAAGGGGA
rJMSF048G08+ GAGCTAAAACAGTTGAGGACCCCAATGTCTCCAAGGCAAGTGAAGTGGGGAAGAAGGGGA
rJMSF045G10+ GAGCTAAAACAGTTGAGGACCCCAATGTCTCCAAGGCAAGTGAAGTGGGGAAGAAGGGGA
____________________________________________________________
consensus GAGCTAAAACAGTTGAGGACCCCAATGTCTCCAAGGCAAGTGAAGTGGGGAAGAAGGGGA
. : . : . : . : . : . :
rJMSF022M07+ AGAAGCCAAACCGTGTGCTCCTTTCAACATCCAGTTCCCGACGATATTGAGACTTGAGAG
rJMSF048G08+ AGAAGCCAAACCGTGTGCTCCTTTCAACATCCAGTTCCCGACGATATTGAGACTTGAGAG
rJMSF045G10+ AGAAGCCAAACCGTGTGCTCCTTTCAACATCCAGTTCCCGACGATATTGAGACTTGAGAG
____________________________________________________________
consensus AGAAGCCAAACCGTGTGCTCCTTTCAACATCCAGTTCCCGACGATATTGAGACTTGAGAG
. : . : . : . : . : . :
rJMSF022M07+ AGAGGGGGAGTGTGCTATTTCTCCAGAATGAGACTGCTGTATATTTTGAACTTTATTTGT
rJMSF048G08+ AGAGGGGGAGTGTGCTATTTCTCCAGAATGAGACTGCTGTATATTTTGAACTTTATTTGT
rJMSF045G10+ AGAGGGGGAGTGTGCTATTTCTCCAGAATGAGACTGCTGTATATTTTGAACTTTATTTGT
____________________________________________________________
consensus AGAGGGGGAGTGTGCTATTTCTCCAGAATGAGACTGCTGTATATTTTGAACTTTATTTGT
. : . : . : . : . : . :
rJMSF022M07+ GTTGCAACTGCATAAGTTGGGTTGTCTACGAAAAAACCGATTTTGGGATAGTTGTACGTT
rJMSF048G08+ GTTGCAACTGCATAAGTTGGGTTGTCTACGAAAAAACCGATTTTGGGATAGTTGTACGTT
rJMSF045G10+ GTTGCAACTGCATAAGTTGGGTTGTCTACGAAAAAACCGATTTTGGGATAGTTGTACGTT
____________________________________________________________
consensus GTTGCAACTGCATAAGTTGGGTTGTCTACGAAAAAACCGATTTTGGGATAGTTGTACGTT
. : . : . : . : . : . :
rJMSF022M07+ TATTTTAATTGTTTTCTTTTTTCTTTAGCGAATAATGTTGCTGCTGTTATTATTG
rJMSF048G08+ TATTTTAATTGTTTTCTTTTTTCTTTAGCGAATAATGTTGCTGCTGTTATTATTG
rJMSF045G10+ TATTTTAATTGTTTTCTTTTTTCTTTAGCGAATAATGTTGCTGCTGTTATTATTGTTACT
____________________________________________________________
consensus TATTTTAATTGTTTTCTTTTTTCTTTAGCGAATAATGTTGCTGCTGTTATTATTGTTACT
. : . : . : . : . : . :
rJMSF045G10+ TCTGGTACACTACTACTATAGAAGAGTAAACTGGTGTTTAGTTTGTCAGTTATGCAATTG
____________________________________________________________
consensus TCTGGTACACTACTACTATAGAAGAGTAAACTGGTGTTTAGTTTGTCAGTTATGCAATTG