Contig 002978:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013C21Sequence232002152 (5)757002978 (4)gb|KJB41341.1|3e-132hypothetical protein B456_007G099700 [Gossypium raimondii]
JMSF034J19Sequence597002152 (5)emb|CDP08805.1|8e-74unnamed protein product [Coffea canephora]734002978 (4)gb|KJB41341.1|9e-113hypothetical protein B456_007G099700 [Gossypium raimondii]
JMSF045F20Sequence811002152 (5)ref|XP_009784968.1|2e-125PREDICTED: signal peptide peptidase-like 4 [Nicotiana sylvestris]776002978 (4)gb|KJB41341.1|2e-116hypothetical protein B456_007G099700 [Gossypium raimondii]
JMSF050N24Sequence222002152 (5)665002978 (4)gb|KJB41341.1|2e-86hypothetical protein B456_007G099700 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF013C21+                 ATTCTGCATAGTATTTGCTGTTATGTGGGCTGTTTACAGACGTGTCTCCNTTG
                      ____________________________________________________________
consensus                    ATTCTGCATAGTATTTGCTGTTATGTGGGCTGTTTACAGACGTGTCTCCNTTG
 
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rJMSF013C21+          CTNGGATAGGTCAAGATATACTTGGTATTGCGTTGATTATCACAGTTCTCCAAATTGTGC
rJMSF034J19+                                                 TCACAGTTCTCCAAATTGTGC
rJMSF045F20+                                 GGTATTGCGTTGATTATCACAGTTCTCCAAATTGTGC
                      ____________________________________________________________
consensus             CTNGGATAGGTCAAGATATACTTGGTATTGCGTTGATTATCACAGTTCTCCAAATTGTGC
 
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rJMSF013C21+          GAGTTCCCAATCTCAAGGTCGGAACTGTTCTTCTCGGCTGTGCTTTCTTATATGACCTGT
rJMSF034J19+          GAGTTCCCAATCTCAAGGTCGGAACTGTTCTTCTCGGCTGTGCTTTCTTATATGACCTGT
rJMSF050N24+                         AGGTCGGAACTGTTCTTCTCGGCTGTGCTTTCTTATATGACCTGT
rJMSF045F20+          GAGTTCCCAATCTCAAGGTCGGAACTGTTCTTCTCGGCTGTGCTTTCTTATATGACCTGT
                      ____________________________________________________________
consensus             GAGTTCCCAATCTCAAGGTCGGAACTGTTCTTCTCGGCTGTGCTTTCTTATATGACCTGT
 
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rJMSF013C21+          TCTGGGTGTTTGTTTCAAAATGGTGGTTT-CACGAGAGTGTAATGATAGTGGTTGCTCGT
rJMSF034J19+          TCTGGGTGTTTGTTTCAAAATGGTGGTTT-CACGAGAGTGTAATGATAGTGGTTGCTCGT
rJMSF050N24+          TCTGGGTGTTTGTTTCAAAATGGTGGTTTCCACGAGAGTGTAATGATAGTGGTTGCTCGT
rJMSF045F20+          TCTGGGTGTTTGTTTCAAAATGGTGGTTT-CACGAGAGTGTAATGATAGTGGTTGCTCGT
                      ____________________________________________________________
consensus             TCTGGGTGTTTGTTTCAAAATGGTGGTTT-CACGAGAGTGTAATGATAGTGGTTGCTCGT
 
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rJMSF013C21+          GGTGATAAAAGTGGAGAAGATGGAATACCCATGCTGCTGAAAATCCCACGGATGTTTGAT
rJMSF034J19+          GGTGATAAAAGTGGAGAAGATGGAATACCCATGCTGCTGAAAATCCCACGGATGTTTGAT
rJMSF050N24+          GGTGATAAAAGTGGAGAAGATGGAATACCCATGCTGCTGAAAATCCCACGGATGTTTGAT
rJMSF045F20+          GGTGATAAAAGTGGAGAAGATGGAATACCCATGCTGCTGAAAATCCCACGGATGTTTGAT
                      ____________________________________________________________
consensus             GGTGATAAAAGTGGAGAAGATGGAATACCCATGCTGCTGAAAATCCCACGGATGTTTGAT
 
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rJMSF013C21+          CCTTGGGGTGGTTATAGTGTCATCGGTTTTGGTGACATTATTCTACCGGGTTTACTTGTA
rJMSF034J19+          CCTTGGGGTGGTTATAGTGTCATCGGTTTTGGTGACATTATTCTACCGGGTTTACTTGTA
rJMSF050N24+          CCTTGGGGTGGTTATAGTGTCATCGGTTTTGGTGACATTATTCTACCGGGTTTACTTGTA
rJMSF045F20+          CCTTGGGGTGGTTATAGTGTCATCGGTTTTGGTGACATTATTCTACCGGGTTTACTTGTA
                      ____________________________________________________________
consensus             CCTTGGGGTGGTTATAGTGTCATCGGTTTTGGTGACATTATTCTACCGGGTTTACTTGTA
 
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rJMSF013C21+          GCATTTTCACTAAGGTATGATTGGTTATCTAAAAAGAGTCTTCGTACGGGTTACTTTCTA
rJMSF034J19+          GCATTTTCACTAAGGTATGATTGGTTATCTAAAAAGAGTCTTCGTACGGGTTACTTTCTA
rJMSF050N24+          GCATTTTCACTAAGGTATGATTGGTTATCTAAAAAGAGTCTTCGTACGGGTTACTTTCTA
rJMSF045F20+          GCATTTTCACTAAGGTATGATTGGTTATCTAAAAAGAGTCTTCGTACGGGTTACTTTCTA
                      ____________________________________________________________
consensus             GCATTTTCACTAAGGTATGATTGGTTATCTAAAAAGAGTCTTCGTACGGGTTACTTTCTA
 
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rJMSF013C21+          TGGGCAATGATGGCTTATGGTTTAGGTTTGCTTATAACATATTTGGCTCTCAACTTGATG
rJMSF034J19+          TGGGCAATGATGGCTTATGGTTTAGGTTTGCTTATAACATATTTGGCTCTCAACTTGATG
rJMSF050N24+          TGGGCAATGATGGCTTATGGTTTAGGTTTGCTTATAACATATTTGGCTCTCAACTTGATG
rJMSF045F20+          TGGGCAATGATGGCTTATGGTTTAGGTTTGCTTATAACATATTTGGCTCTCAACTTGATG
                      ____________________________________________________________
consensus             TGGGCAATGATGGCTTATGGTTTAGGTTTGCTTATAACATATTTGGCTCTCAACTTGATG
 
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rJMSF013C21+          GATGGACATGGCCAACCCGCATTGCTTTACATAGTTCCTTTCACTTTAGGAACGTTTTTG
rJMSF034J19+          GATGGACATGGCCAACCCGCATTGCTTTACATAGTTCCTTTCACTTTAGGAACGTTTTTG
rJMSF050N24+          GATGGACATGGCCAACCCGCATTGCTTTACATAGTTCCTTTCACTTTAGGAACGTTTTTG
rJMSF045F20+          GATGGACATGGCCAACCCGCATTGCTTTACATAGTTCCTTTCACTTTAGGAACGTTTTTG
                      ____________________________________________________________
consensus             GATGGACATGGCCAACCCGCATTGCTTTACATAGTTCCTTTCACTTTAGGAACGTTTTTG
 
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rJMSF013C21+          ACACTAGGAAAGAAAAGAGGCGACCTCAAGCATTTATGGACGAAAGGCGACCCTGACCGA
rJMSF034J19+          ACACTAGGAAAGAAAAGAGGCGACCTCAAGCATTTATGGACGAAAGGCGACCCTGACCGA
rJMSF050N24+          ACACTAGGAAAGAAAAGAGGCGACCTCAAGCATTTATGGACGAAAGGCGACCCTGACCGA
rJMSF045F20+          ACACTAGGAAAGAAAAGAGGCGACCTCAAGCATTTATGGACGAAAGGCGACCCTGACCGA
                      ____________________________________________________________
consensus             ACACTAGGAAAGAAAAGAGGCGACCTCAAGCATTTATGGACGAAAGGCGACCCTGACCGA
 
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rJMSF013C21+          CCTTGCCCCCATGTCCAGCTCCAACCTGCAGATTAAGTAAATACTGCAAAAAGAACCCCA
rJMSF034J19+          CCTTGCCCCCATGTCCAGCTCCAACCTGCAGATTAAGTAAATACTGCAAAAAGAACCCCA
rJMSF050N24+          CCTTGCCCCCATGTCCAGCTCCAACCTGCAGATTAAGTAAATACTGCAAAAAGAACCCCA
rJMSF045F20+          CCTTGCCCCCATGTCCAGCTCCAACCTGCAGATTAAGTAAATACTGCAAAAAGAACCCCA
                      ____________________________________________________________
consensus             CCTTGCCCCCATGTCCAGCTCCAACCTGCAGATTAAGTAAATACTGCAAAAAGAACCCCA
 
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rJMSF013C21+          ATCTAATCTAATGTAGGACTCTGCTTTCAAGTTAGTGTGTATAGTTTAGAAGATTGAGTG
rJMSF034J19+          ATCTAATCTAATGTAGGACTCTGCTTTCAAGTTAGTGTGTATAGTTTAGAAGATTGAGTG
rJMSF050N24+          ATCTAATCTAATGTAGGACTCTGCTTTCAAGTTAGTGTGTATAGTTTAGAAGATTGAGTG
rJMSF045F20+          ATCTAATCTAATGTAGGACTCTGCTTTCAAGTTAGTGTGTATAGTTTAGAAGATTGAGTG
                      ____________________________________________________________
consensus             ATCTAATCTAATGTAGGACTCTGCTTTCAAGTTAGTGTGTATAGTTTAGAAGATTGAGTG
 
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rJMSF013C21+          TTGTAACGATACATATGATCTCTGTAGCTATTCTCC                        
rJMSF034J19+          TTGTAACGATACATATGATCTCTGTAGCTATTCTCCTGTTTGAACTCGAGTGTGTATTAG
rJMSF050N24+          TTGTAACGATACATATGATCTCTGTAGCTATTCT                          
rJMSF045F20+          TTGTAACGATACATATGATCTCTGTAGCTATTCTCCTGTTTGAACTCGAGTGTGTATTAG
                      ____________________________________________________________
consensus             TTGTAACGATACATATGATCTCTGTAGCTATTCTCCTGTTTGAACTCGAGTGTGTATTAG
 
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rJMSF034J19+          TAGTGGCCATGTGCTTAACAAAACGCAGAATTATGAGTTGTAATGAC             
rJMSF045F20+          TAGTGGCCATGTGCTTAACAAAACGCAGAATTATGAGTTGTAATGACCACGAATTCCTAT
                      ____________________________________________________________
consensus             TAGTGGCCATGTGCTTAACAAAACGCAGAATTATGAGTTGTAATGACCACGAATTCCTAT