Contig 002977:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029D21Sequence746010879 (5)emb|CDP06327.1|3e-10unnamed protein product [Coffea canephora]694002977 (2)ref|XP_009775646.1|2e-118PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic [Nicotiana sy
JMSF045C04Sequence784010879 (5)ref|XP_009624861.1|4e-10PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic [Nicotiana to743002977 (2)ref|XP_009630189.1|3e-59PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic [Nicotiana to

Alignment

This contig is upended


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rJMSF029D21+                                    CTAGGGCTGTCGTCTGCTGATGTTAGGCGACCAT
                      ____________________________________________________________
consensus                                       CTAGGGCTGTCGTCTGCTGATGTTAGGCGACCAT
 
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rJMSF029D21+          TGGTTGGTTGCATAACAAGATTGGTGCCCCAAAAAGGTGTTCATCTTATTCGACATGCTA
                      ____________________________________________________________
consensus             TGGTTGGTTGCATAACAAGATTGGTGCCCCAAAAAGGTGTTCATCTTATTCGACATGCTA
 
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rJMSF029D21+          TATATAGAACTTTGGAGTTGGGAGGACAGTTTGTTCTTCTTGGTTCAAGCCCTCTCTCCC
                      ____________________________________________________________
consensus             TATATAGAACTTTGGAGTTGGGAGGACAGTTTGTTCTTCTTGGTTCAAGCCCTCTCTCCC
 
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rJMSF029D21+          ATATTCAGAGGGAGTTTGAGGATATTAGCAACCATTTCCAAAATCATGAACATGCTCGGT
                      ____________________________________________________________
consensus             ATATTCAGAGGGAGTTTGAGGATATTAGCAACCATTTCCAAAATCATGAACATGCTCGGT
 
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rJMSF029D21+          TGATATTGAAGTATGATGAATCTCTTTCACGTTTAATTTTTGCAGCATCCGACATGTTTA
rJMSF045C04+                                               TTTTGCAGCATCCGACATGTTTA
                      ____________________________________________________________
consensus             TGATATTGAAGTATGATGAATCTCTTTCACGTTTAATTTTTGCAGCATCCGACATGTTTA
 
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rJMSF029D21+          TCG-TTCCATCCATCTTTGAGCCGTGTGGCCTAACACAGATGATTGCAATGAGATATGGA
rJMSF045C04+          TCGTTTCCATCCATCTTTGAGCCGTGTGGCCTAACACAGATGATTGCAATGAGATATGGA
                      ____________________________________________________________
consensus             TCGTTTCCATCCATCTTTGAGCCGTGTGGCCTAACACAGATGATTGCAATGAGATATGGA
 
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rJMSF029D21+          TCAATTCCTATAGCTAGGAAAACCGGGGGCTTGAACGACAGCGTATTTGATGTTGATGAT
rJMSF045C04+          TCAATTCCTATAGCTAGGAAAACCGGGGGCTTGAACGACAGCGTATTTGATGTTGATGAT
                      ____________________________________________________________
consensus             TCAATTCCTATAGCTAGGAAAACCGGGGGCTTGAACGACAGCGTATTTGATGTTGATGAT
 
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rJMSF029D21+          AACACCATACCAATCCAATTTCGGAATGGCTTCACATTTACGACTGCTGATGAGCAGGGT
rJMSF045C04+          AACACCATACCAATCCAATTTCGGAATGGCTTCACATTTACGACTGCTGATGAGCAGGGT
                      ____________________________________________________________
consensus             AACACCATACCAATCCAATTTCGGAATGGCTTCACATTTACGACTGCTGATGAGCAGGGT
 
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rJMSF029D21+          CTTAGCAACGCAATGGAACGCGCATTTAATCATTATAAGAACAATAGTGAAGGCTGGAAA
rJMSF045C04+          CTTAGCAACGCAATGGAACGCGCATTTAATCATTATAAGAACAATAGTGAAGGCTGGAAA
                      ____________________________________________________________
consensus             CTTAGCAACGCAATGGAACGCGCATTTAATCATTATAAGAACAATAGTGAAGGCTGGAAA
 
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rJMSF029D21+          GAGCTTATTCAGAAGGATATGACCATAGATTTTAGTTGGAACTCATCAGCATCACAATAT
rJMSF045C04+          GAGCTTATTCAGAAGGATATGACCATAGATTTTAGTTGGAACTCATCAGCATCACAATAT
                      ____________________________________________________________
consensus             GAGCTTATTCAGAAGGATATGACCATAGATTTTAGTTGGAACTCATCAGCATCACAATAT
 
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rJMSF029D21+          GAAGAACTCTATCAGATGGCAGCAGCTAGAGCAAGGGCCACATCAAGCCGTATTTGAGAT
rJMSF045C04+          GAAGAACTCTATCAGATGGCAGCAGCTAGAGCAAGGGCCACATCAAGCCGTATTTGAGAT
                      ____________________________________________________________
consensus             GAAGAACTCTATCAGATGGCAGCAGCTAGAGCAAGGGCCACATCAAGCCGTATTTGAGAT
 
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rJMSF029D21+          TGTTCTGATAATGGTGATTCTTTTATTCATTGATCTAAGCTTGTGCTGCCCTGATTCAAC
rJMSF045C04+          TGTTCTGATAATGGTGATTCTTTTATTCATTGATCTAAGCTTGTGCTGCCCTGATTCAAC
                      ____________________________________________________________
consensus             TGTTCTGATAATGGTGATTCTTTTATTCATTGATCTAAGCTTGTGCTGCCCTGATTCAAC
 
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rJMSF029D21+          T                                                           
rJMSF045C04+          TAGCAGAGTAGCAGATAAACACACACACACAAAGATAATGCTCGAGTTCACCATATGATT
                      ____________________________________________________________
consensus             TAGCAGAGTAGCAGATAAACACACACACACAAAGATAATGCTCGAGTTCACCATATGATT
 
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rJMSF045C04+          TTGGATGACGCCCTGATTTACATGTAAATAATTTCATTTTTGTAGATTTGTAATAATGTA
                      ____________________________________________________________
consensus             TTGGATGACGCCCTGATTTACATGTAAATAATTTCATTTTTGTAGATTTGTAATAATGTA
 
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rJMSF045C04+          TATAGTCACCAACTACTCCCGTACAAGATTGTGGTGTCACTAATCATAGAAAATTAGAAA
                      ____________________________________________________________
consensus             TATAGTCACCAACTACTCCCGTACAAGATTGTGGTGTCACTAATCATAGAAAATTAGAAA
 
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rJMSF045C04+          TACAATAAGTGCATTATTTATTGATCATGAGTACTGTTGATGTGCAGTGCATAGTTCATC
                      ____________________________________________________________
consensus             TACAATAAGTGCATTATTTATTGATCATGAGTACTGTTGATGTGCAGTGCATAGTTCATC
 
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rJMSF045C04+          AATTTTTTATTTTTTATTTTTCTTCTTCTTGGATGTGTGCTGAACCGACCAATGATTATG
                      ____________________________________________________________
consensus             AATTTTTTATTTTTTATTTTTCTTCTTCTTGGATGTGTGCTGAACCGACCAATGATTATG