| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF029P11 | Sequence | 526 | 000951 (5) | ref|XP_006357482.1| | 4e-59 | PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum] | 676 | 002976 (5) | ref|XP_009628597.1| | 5e-49 | PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis] |
| JMSF007I13 | Sequence | 413 | 000951 (5) | ref|XP_006357482.1| | 1e-34 | PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum] | 725 | 002976 (5) | ref|XP_009628597.1| | 1e-73 | PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis] |
| JMSF016K22 | Sequence | 238 | 000951 (5) | ref|XP_006357482.1| | 2e-28 | PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum] | 748 | 002976 (5) | ref|XP_004243351.1| | 2e-50 | PREDICTED: bromodomain-containing protein 4-like [Solanum lycopersicum] |
| JMSF034G04 | Sequence | 692 | 000951 (5) | ref|XP_006357482.1| | 1e-72 | PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum] | 739 | 002976 (5) | ref|XP_009782976.1| | 1e-53 | PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve |
| JMSF045B07 | Sequence | 673 | 000951 (5) | ref|XP_006357482.1| | 6e-92 | PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum] | 647 | 002976 (5) | ref|XP_009628597.1| | 1e-46 | PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF007I13+ TCTGCCCAGTCAATCAAACCCTACTCCAGAG
____________________________________________________________
consensus TCTGCCCAGTCAATCAAACCCTACTCCAGAG
. : . : . : . : . : . :
rJMSF007I13+ ATGGTTCCTAGTACTGTTTCTATGCAAGTGCCTTTTTCTGGGATTTCTCAAACGGTTGCT
rJMSF016K22+ CAAACGGTTGCT
____________________________________________________________
consensus ATGGTTCCTAGTACTGTTTCTATGCAAGTGCCTTTTTCTGGGATTTCTCAAACGGTTGCT
. : . : . : . : . : . :
rJMSF007I13+ AGCCGCCCTGAGGGAATGCCTTATGGGTATGGGGGGCATGGTAGGCCAGTTCAACCACAG
rJMSF016K22+ AGCCGCCCTGAGGGAATGCCTTATGGGTATGGGGGGCATGGTAGGCCAGTTCAACCACAG
rJMSF034G04+ TATGGGTATGGGGGNCATGGTAGGCCAGTTCAACCACAG
____________________________________________________________
consensus AGCCGCCCTGAGGGAATGCCTTATGGGTATGGGGGGCATGGTAGGCCAGTTCAACCACAG
. : . : . : . : . : . :
rJMSF007I13+ GCTCCTGCTCAGCATCTGAGGCCCACATTTGGTGCAGCTGGTGATGGGTATGGAGTTGGT
rJMSF016K22+ GCTCCTGCTCAGCATCTGAGGCCCACATTTGGTGCAGCTGGTGATGGGTATGGAGTTGGT
rJMSF034G04+ GNTCCTGCTCAGCATNTGAGGCCCACATTTGGTGCAGCTGGTGATGGGTATGGAGTTGGT
rJMFF029P11+ TTGGTGCAGCTGGTGATGGGTATGGAGTTGGT
____________________________________________________________
consensus GCTCCTGCTCAGCATCTGAGGCCCACATTTGGTGCAGCTGGTGATGGGTATGGAGTTGGT
. : . : . : . : . : . :
rJMSF007I13+ GGGTCCCACCCATCACTTGCCCCAGGAAATGCTTATGTAATGTATGATGGGGAAGGAGCA
rJMSF016K22+ GGGTCCCACCCATCACTTGCCCCAGGAAATGCTTATGTAATGTATGATGGGGAAGGAGCA
rJMSF034G04+ GGGTCCCACCCATCACTTGCCCCAGGAAATGCTTATGTAATGTATGATGGGGAAGGAGCA
rJMFF029P11+ GGGTCCCACCCATCACTTGCCCCAGGAAATGCTTATGTAATGTATGATGGGGAAGGAGCA
rJMSF045B07+ TCACTTGCCCCAGGAAATGCTTATGTAATGTATGAGGGGGAAGGAGCA
____________________________________________________________
consensus GGGTCCCACCCATCACTTGCCCCAGGAAATGCTTATGTAATGTATGATGGGGAAGGAGCA
. : . : . : . : . : . :
rJMSF007I13+ AGGACTCATCCAACCCAACAACCTCACTTCTCACATGGTGGTTATCCTCCATCCAGCTTT
rJMSF016K22+ AGGACTCATCCAACCCATCAACCTCACTCCTCACATGGTGGTTATCCTCCATCCAGCTTT
rJMSF034G04+ AGGACTCATCCAACCCAACAACCTCACTTCTCACATGGTGGTTATCCTCCATCCAGCTTT
rJMFF029P11+ AGGACTCATCCAACCCAACAACCTCACTTCTCACATGGTGGTTATCCTCCATCCAGCTTT
rJMSF045B07+ AGGACTCATCCAACCCAACAACCTCACTTCTCACATGGTGGTTATCCTCCATCCAGCTTT
____________________________________________________________
consensus AGGACTCATCCAACCCAACAACCTCACTTCTCACATGGTGGTTATCCTCCATCCAGCTTT
. : . : . : . : . : . :
rJMSF007I13+ CCTATGCAGAACCCACAGCCGGCTGCCAACACTAGTGTAATGACTCGTCCGCCACAGATG
rJMSF016K22+ CCTATGCAGAACCCACAGCCGGCTGCCAACACTAGTGTAATGACTCGTCCGCCACAGATG
rJMSF034G04+ CCTATGCAGAACCCACAGCCGGCTGCCAACACTAGTGTAATGACTCGTCCGCCACAGATG
rJMFF029P11+ CCTATGCAGAACCCACAGCCGGCTGCCAACACTAGTGTAATGACTCGTCCGCCACAGATG
rJMSF045B07+ CCTATGCAGAACCCACAGCCGGCTGCCAACACTAGTGTAATGACTCGTCCGCCACAGATG
____________________________________________________________
consensus CCTATGCAGAACCCACAGCCGGCTGCCAACACTAGTGTAATGACTCGTCCGCCACAGATG
. : . : . : . : . : . :
rJMSF007I13+ GTGCGCAACCATCCCTACAATGAATTGATTGAGAAACTGGTGAGTATGGGTTACAGAGGT
rJMSF016K22+ GTGCGCAACCATCCCTACAATGAATTGATTGAGAAACTGGTGAGTATGGGTTACAGAGGT
rJMSF034G04+ GTGCGCAACCATCCCTACAATGAATTGATTGAGAAACTGGTGAGTATGGGTTACAGAGGT
rJMFF029P11+ GTGCGCAACCATCCCTACAATGAATTGATTGAGAAACTGGTGAGTATGGGTTACAGAGGT
rJMSF045B07+ GTGCGCAACCATCCCTACAATGAATTGATTGAGAAACTGGTGAGTATGGGTTACAGAGGT
____________________________________________________________
consensus GTGCGCAACCATCCCTACAATGAATTGATTGAGAAACTGGTGAGTATGGGTTACAGAGGT
. : . : . : . : . : . :
rJMSF007I13+ GATCATGTCATTGCTGTGATACAAAGACTGGAGGAGAGTGGTCAGACTGTTGATTTCAAT
rJMSF016K22+ GATCATGTCATTGCTGTGATACAAAGACTGGAGGAGAGTGGTCAGACTGTTGATTTCAAT
rJMSF034G04+ GATCATGTCATTGCTGTGATACAAAGACTGGAGGAGAGTGGTCAGACTGTTGATTTCAAT
rJMFF029P11+ GATCATGTCATTGCTGTGATACAAAGACTGGAGGAGAGTGGTCAGACTGTTGATTTCAAT
rJMSF045B07+ GATCATGTCATTGCTGTGATACAAAGACTGGAGGAGAGTGGTCAGACTGTTGATTTCAAT
____________________________________________________________
consensus GATCATGTCATTGCTGTGATACAAAGACTGGAGGAGAGTGGTCAGACTGTTGATTTCAAT
. : . : . : . : . : . :
rJMSF007I13+ GCCATACTTGATAGACTGAATGGGCATTCCTCTGGGGGCTCTCAGAGAGGATGGTAAGGG
rJMSF016K22+ GCCATACTTGATAGACTGAATGGGCATTCCTCTGGGGGCTCTCAGAGAGGATGGTAAGGG
rJMSF034G04+ GCCATACTTGATAGACTGAATGGGCATTCCTCTGGGGGCTCTCAGAGAGGATGGTAAGGG
rJMFF029P11+ GCCATACTTGATAGACTGAATGGGCATTCCTCTGGGGGCTCTCAGAGAGGATGGTAAGGG
rJMSF045B07+ GCCATACTTGATAGACTGAATGGGCATTCCTCTGGGGGCTCTCAGAGAGGATGGTAAGGG
____________________________________________________________
consensus GCCATACTTGATAGACTGAATGGGCATTCCTCTGGGGGCTCTCAGAGAGGATGGTAAGGG
. : . : . : . : . : . :
rJMSF007I13+ TAAATCACCACCGTAACCTGTCCAGTTGACATTCTTCTTGGAGGAATCGCTAAGAGGATA
rJMSF016K22+ TAAATCACCACCGTAACCTGTCCAGTTGACATTCTTCTTGGAGGAATCGCTAAGAGGATA
rJMSF034G04+ TAAATCACCACCGTAACCTGTCCAGTTGACATTCTTCTTGGAGGAATCGCTAAGAGGATA
rJMFF029P11+ TAAATCACCACCGTAACCTGTCCAGTTGACATTCTTCTTGGAGGAATCGCTAAGAGGATA
rJMSF045B07+ TAAATCACCACCGTAACCTGTCCAGTTGACATTCTTCTTGGAGGAATCGCTAAGAGGATA
____________________________________________________________
consensus TAAATCACCACCGTAACCTGTCCAGTTGACATTCTTCTTGGAGGAATCGCTAAGAGGATA
. : . : . : . : . : . :
rJMSF007I13+ GTTGAGACATTCAACTATCTCCCCACCCCCCACCCCTGATAAGTGCGACAATGGTTTTAA
rJMSF016K22+ GTTGAGACATTCAACTATCTCCCCACCCCCCACCCCTGATAAGTGCGACAATGGTTTTAA
rJMSF034G04+ GTTGAGACATTCAACTATCTCCCCACCCCCCACCCCTGATAAGTGCGACAATGGTTTTAA
rJMFF029P11+ GTTGAGACATTCAACTATCTCCCCACCCCCCACCCCTGATAAGTGCGACAATGGTTTTAA
rJMSF045B07+ GTTGAGACATTCAACTATCTCCCCACCCCCCACCCCTGATAAGTGCGACAATGGTTTTAA
____________________________________________________________
consensus GTTGAGACATTCAACTATCTCCCCACCCCCCACCCCTGATAAGTGCGACAATGGTTTTAA
. : . : . : . : . : . :
rJMSF007I13+ TCTACCATGACAATGAATAAAATGTAGTATGAAT
rJMSF016K22+ TCTA-CATGACAATGAATAAAATGTAGTATGAATAGCTTGGAAATTTGGTATATATAAGA
rJMSF034G04+ TCTA-CATGACAATGAATAAAATGTAGTATGAATAGCTTGGAAATTTGGTATATATAAGA
rJMFF029P11+ TCTA-CATGACAATGAATAAAATGTAGTATGAATAGCTTGGAAATTTGGTATATATAAGA
rJMSF045B07+ TCTA-CATGACAATGAATAAAATGTAGTATGAATAGCTTGGAAATTTGGTATATATAAGA
____________________________________________________________
consensus TCTA-CATGACAATGAATAAAATGTAGTATGAATAGCTTGGAAATTTGGTATATATAAGA
. : . : . : . : . : . :
rJMSF016K22+ TGAAGAGATGCAGTGTATTATTTGGTCGTGGTCTCTTTCCTTGCTTTTTATGTTGTTGTA
rJMSF034G04+ TGAAGAGATGCAGTGTATTATTTGGTCGTGGTCTCTTTCCTTGCTTTTTATGTTGTTGTA
rJMFF029P11+ TGAAGAGATGCAGTGTATTATTTGGTCGTGGTCTCTTTCCTTGCTTTTTATGTTGTTGTA
rJMSF045B07+ TGAAGAGATGCAGTGTATTATTTGGTCGTGGTCTCTTTCCTTGCTTTTTATGTTGTTGTA
____________________________________________________________
consensus TGAAGAGATGCAGTGTATTATTTGGTCGTGGTCTCTTTCCTTGCTTTTTATGTTGTTGTA
. : . : . : . : . : . :
rJMSF016K22+ ATGTTTAAACGCTTTGT
rJMSF034G04+ ATGTTTAAACGCTTTGTTATTATTGGTGTGGGATATCATCT
rJMFF029P11+ ATGTTTAAACGCTTTGTTATTATTGGTGTGGGATATCATCT
rJMSF045B07+ ATGTTTAAACGCTTTGTTATTATTGGTGTGGGATATCATCTTACATGATATGCCAAGTTT
____________________________________________________________
consensus ATGTTTAAACGCTTTGTTATTATTGGTGTGGGATATCATCTTACATGATATGCCAAGTTT