Contig 002975:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016O13Sequence221001640 (3)264002975 (4)emb|CDP12153.1|9e-25unnamed protein product [Coffea canephora]
JMFF045O13Sequence630015312gb|KDO46279.1|2e-29hypothetical protein CISIN_1g026124mg [Citrus sinensis]589002975 (4)gb|EMT28835.1|2e-57Fatty acyl-CoA synthetase A [Aegilops tauschii]
JMSF044P02Sequence400002975 (4)ref|XP_003524440.1|3e-05PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max]
JMSF051M17Sequence104001640 (3)729002975 (4)ref|XP_010910559.1|3e-110PREDICTED: long chain acyl-CoA synthetase 4-like [Elaeis guineensis]

Alignment

This contig is upended


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rJMSF051M17+              TGNTCCTGAGATGGGGTACGATGCTCTATCAGACGTACCACGCGGTGAAGTATGTG
                      ____________________________________________________________
consensus                 TGNTCCTGAGATGGGGTACGATGCTCTATCAGACGTACCACGCGGTGAAGTATGTG
 
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rJMSF051M17+          TGAGGGGCGATACGGTTTTTTCAGGTTACTACAAGCGCGAAGATCTTACAAAGGAGGTCC
                      ____________________________________________________________
consensus             TGAGGGGCGATACGGTTTTTTCAGGTTACTACAAGCGCGAAGATCTTACAAAGGAGGTCC
 
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rJMSF051M17+          TGGTTGATGGGTGGTTCCACACAGGTGATATTGGCGAGTGGCAACCGACTGGGGGCTTGA
                      ____________________________________________________________
consensus             TGGTTGATGGGTGGTTCCACACAGGTGATATTGGCGAGTGGCAACCGACTGGGGGCTTGA
 
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rJMSF051M17+          AAATAATTGATCGTAAGAAGAACATTTTCAAGCTCTCACAAGGAGAATATGTTGCAGTGG
rJMFF045O13+                                                              TGCAGTGG
                      ____________________________________________________________
consensus             AAATAATTGATCGTAAGAAGAACATTTTCAAGCTCTCACAAGGAGAATATGTTGCAGTGG
 
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rJMSF051M17+          AAAATCTAGAGAATGTATATGGACAAGTCTCGGTTATTGACTCCATTTGGATATACGGGA
rJMFF045O13+          AAAATCTAGAGAATGTATATGGACAAGTCTCGGTTATTGACTCCATTTGGATATACGGGA
                      ____________________________________________________________
consensus             AAAATCTAGAGAATGTATATGGACAAGTCTCGGTTATTGACTCCATTTGGATATACGGGA
 
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rJMSF051M17+          ACAGCTTCGAGTCATTTCTCGTAGCAATTGTTAGCCCAAACAAGCCAGCAATTGAAAATT
rJMFF045O13+          ACAGCTTCGAGTCATTTCTCGTAGCAATTGTTAGCCCAAACAAGCCAGCAATTGAAAATT
                      ____________________________________________________________
consensus             ACAGCTTCGAGTCATTTCTCGTAGCAATTGTTAGCCCAAACAAGCCAGCAATTGAAAATT
 
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rJMSF051M17+          GGGCTGAACAAAACGACATACCTGGAGATTTCGACTCCCTATGTGAAAATCCAAAGGTGA
rJMFF045O13+          GGGCTGAACAAAACGACATACCTGGAGATTTCGACTCCCTATGTGAAAATCCAAAGGTGA
                      ____________________________________________________________
consensus             GGGCTGAACAAAACGACATACCTGGAGATTTCGACTCCCTATGTGAAAATCCAAAGGTGA
 
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rJMFF016O13+                                                GACAAGAAGTTGAAGGGCTTTG
rJMSF051M17+          AGGAGTACATACTCGAAGAGCTCAAGAAAATTGCCAAAGACAAGAAGTTGAAGGGCTTTG
rJMFF045O13+          AGGAGTACATACTCGAAGAGCTCAAGAAAATTGCCAAAGACAAGAAGTTGAAGGGCTTTG
rJMSF044P02+                                     AAATTGCCNAAGACNAGAAGTTGAAGGGCTTTG
                      ____________________________________________________________
consensus             AGGAGTACATACTCGAAGAGCTCAAGAAAATTGCCAAAGACAAGAAGTTGAAGGGCTTTG
 
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rJMFF016O13+          AGATAATAAAGTCTGTGCACCTTGATCCCGTTCCATTCGACATGGAACGCGATCTTCTCA
rJMSF051M17+          AGATAATAAAGTCTGTGCACCTTGATCCCGTTCCATTCGACATGGAACGCGATCTTCTCA
rJMFF045O13+          AGATAATAAAGTCTGTGCACCTTGATCCCGTTCCATTCGACATGGAACGCGATCTTCTCA
rJMSF044P02+          NGATNATAAAGTCTGTGCNCCTTGATCCCGTTCCCTTNGNCNTGGAACNCGATNTTNTCN
                      ____________________________________________________________
consensus             AGATAATAAAGTCTGTGCACCTTGATCCCGTTCCATTCGACATGGAACGCGATCTTCTCA
 
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rJMFF016O13+          CCCCGACATTCAAGAAGAAAAGACCGCAGTTGCTAAAATACTATCAGAGTGTGATTGACA
rJMSF051M17+          CCCCGACATTCAAGAAGAAAAGACCGCAGTTGCTAAAATACTATCAGAGTGTGATTGACA
rJMFF045O13+          CCCCGACATTCAAGAAGAAAAGACCGCAGTTGCTAAAATACTATCAGAGTGTGATTGACA
rJMSF044P02+          CCCCGNCNTTCNAGAAGAAAAGNCCGCNGTTGCTAAAATNCTATCCGNGNGNGNTTGNCN
                      ____________________________________________________________
consensus             CCCCGACATTCAAGAAGAAAAGACCGCAGTTGCTAAAATACTATCAGAGTGTGATTGACA
 
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rJMFF016O13+          ACATGTACAAGAGTGCTAAATGAGCTTCATGGTGAAGAATAGTGACTGAGTTTCATCTTT
rJMSF051M17+          ACATGTACAAGAGTGCTAAATGAGCTTCATGGTGAAGAATAGTGACTGAGTTTCATCTTT
rJMFF045O13+          ACATGTACAAGAGTGCTAAATGAGCTTCATGGTGAAGAATAGTGACTGAGTTTCATCTTT
rJMSF044P02+          ACNTGTNCCAGNGTGCTAAATGAGNTTCCTGGTGAAGAATAGNGNCTGAGTTTCATNTTT
                      ____________________________________________________________
consensus             ACATGTACAAGAGTGCTAAATGAGCTTCATGGTGAAGAATAGTGACTGAGTTTCATCTTT
 
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rJMFF016O13+          TTTACTGCATCCTCTCTAATCTCTGTGTTTTTTATAATGTCATTATTGTACATACAAAAT
rJMSF051M17+          TTTACTGCATCCTCTCTAATCTCTGTGTTTTTTATAATGTCATTATTGTACATACAAAAT
rJMFF045O13+          TTTACTGCATCCTCTCTAATCTCTGTGTTTTTTATAATGTCATTATTGTACATACAAAAT
rJMSF044P02+          TTTACTGCNTCCNCTNTAATCTCTGNGTTTTTTATAANGTCNTTATTGNACNTACNAAAT
                      ____________________________________________________________
consensus             TTTACTGCATCCTCTCTAATCTCTGTGTTTTTTATAATGTCATTATTGTACATACAAAAT
 
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rJMFF016O13+          T                                                           
rJMSF051M17+          TTAATAAAAG                                                  
rJMFF045O13+          TTAATAAAAGATTTTATTATGTGTAATACGAAAGAAAGTTGTTGGTGGTGGATTTTTCAT
rJMSF044P02+          TTAATAAAAGNTTTTNTTATGTGTAATNCGAAAGAAAGTTGTTGGNGGNGGATTTTTCCT
                      ____________________________________________________________
consensus             TTAATAAAAGATTTTATTATGTGTAATACGAAAGAAAGTTGTTGGTGGTGGATTTTTCCT
 
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rJMFF045O13+          TTCCTTTATTATTAAGGAAAATATAGTGTATTGTTAGGG                     
rJMSF044P02+          TTCCNTTATTATTAAGGAAAATATAGTGTATTGTTAGGGNGAAACTCTCCCCCTATGTTC
                      ____________________________________________________________
consensus             TTCCTTTATTATTAAGGAAAATATAGTGTATTGTTAGGGNGAAACTCTCCCCCTATGTTC