clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF021J02 | Sequence | 693 | 006741 (4) | ref|XP_004244012.1| | 6e-39 | PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum] | 782 | 002969 (3) | ref|XP_009762111.1| | 3e-103 | PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref |
JMSF044C14 | Sequence | 648 | 006741 (4) | ref|XP_004244012.1| | 6e-74 | PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum] | 760 | 002969 (3) | ref|XP_009762111.1| | 6e-90 | PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref |
JMSF050J07 | Sequence | 692 | 006741 (4) | ref|XP_004244012.1| | 1e-67 | PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum] | 758 | 002969 (3) | ref|XP_009762111.1| | 4e-94 | PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref |
This contig is upended
. : . : . : . : . : . :
rJMSF021J02+ CGGAGCAGGACTAGGCTTAGCAAAAGTAATGAGAANGAGAAATAAAGGGTA
____________________________________________________________
consensus CGGAGCAGGACTAGGCTTAGCAAAAGTAATGAGAANGAGAAATAAAGGGTA
. : . : . : . : . : . :
rJMSF021J02+ GCATTAGGGGATTGCCTTCGGAGAATGCAGGATACATTGAAGGAAACTCNTCCGGAAAAG
____________________________________________________________
consensus GCATTAGGGGATTGCCTTCGGAGAATGCAGGATACATTGAAGGAAACTCNTCCGGAAAAG
. : . : . : . : . : . :
rJMSF021J02+ GTGACCATGAGAAAAGCATCAACAATAGCGGTCTGCATTACGACTTTCTTCTACCTATGT
rJMSF050J07+ TGACCATGAAAAAAGCGTCANCAATAGCAGTTTGCATTACAACTCTCTTCTACCTATGT
rJMSF044C14+ CAATAGCAGTTTGCATTACAACTCTCTTCTACCTATGT
____________________________________________________________
consensus GTGACCATGAGAAAAGCGTCAACAATAGCAGTTTGCATTACAACTCTCTTCTACCTATGT
. : . : . : . : . : . :
rJMSF021J02+ TGTGGAGGGTTTGGTTATGCAGCCTTTGGCACCAACACACCCGGGAACCTTTTGACAGGA
rJMSF050J07+ TGTGGCGGATTTGGTTATGCAGCCTTTGGCACCAACACGCCCGGGAACCTTTTGACAGGA
rJMSF044C14+ TGTGGCGGATTTGGTTATGCAGCCTTTGGCACCAACACGCCCGGGAACCTTTTGACAGGA
____________________________________________________________
consensus TGTGGCGGATTTGGTTATGCAGCCTTTGGCACCAACACGCCCGGGAACCTTTTGACAGGA
. : . : . : . : . : . :
rJMSF021J02+ TTTGGTTTCTATGAGCCATACTGGCTAGTTGATATCGCAAATGCAGCTGTCATTGTTCAT
rJMSF050J07+ TTCGGTTTCTTTGAGCCATACTGGCTAGTTGATATCGCAAACGCATGTGTCGTGGTTCAT
rJMSF044C14+ TTCGGTTTCTTTGAGCCATACTGGCTAGTTGATATCGCAAACGCATGTGTCGTGGTTCAT
____________________________________________________________
consensus TTCGGTTTCTTTGAGCCATACTGGCTAGTTGATATCGCAAACGCATGTGTCGTGGTTCAT
. : . : . : . : . : . :
rJMSF021J02+ CTTGTCGGAGCATATCAGGTATACACCCAGACATTTTATGCAAATGTTGAGAGCTGGCTT
rJMSF050J07+ CTTGTTGGAGCATATCAGGTATTCAGCCAGCCATTGTTTGAAAATTTTGAGAGCTGGCTT
rJMSF044C14+ CTTGTTGGAGCATATCAGGTATTCAGCCAGCCATTGTTTGAAAATTTTGAGAGCTGGCTT
____________________________________________________________
consensus CTTGTTGGAGCATATCAGGTATTCAGCCAGCCATTGTTTGAAAATTTTGAGAGCTGGCTT
. : . : . : . : . : . :
rJMSF021J02+ GGCAGGAAATTCCCAGAGAGTGAAGTTGTACACAGGGATTATGATGTGAAGCTCTTATGG
rJMSF050J07+ GGGAGGAAATTCCCGGAGAGTGACATTGTGCACAAAGATTATGATCTGAAGCGGTTGTTG
rJMSF044C14+ GGGAGGAAATTCCCGGAGAGTGACATTGTGCACAAAGATTATGATCTGAAGCGGTTATTG
____________________________________________________________
consensus GGGAGGAAATTCCCGGAGAGTGACATTGTGCACAAAGATTATGATCTGAAGCGGTTATTG
. : . : . : . : . : . :
rJMSF021J02+ TTACCAGGTTTTAGGTTGAACATAGTGAGATTGGTTTTCCGAACTGCGTATGTTGCTATA
rJMSF050J07+ TTACCAGGTTTTAGGTTGAATTTACTGAGATTGGTTTTCCGAACTGCTTATGTTGCTACA
rJMSF044C14+ TTACCAGGTTTTAGGTTGAATTTACTGAGATTGGTTTTCCGAACTGCTTATGTTGCTACA
____________________________________________________________
consensus TTACCAGGTTTTAGGTTGAATTTACTGAGATTGGTTTTCCGAACTGCTTATGTTGCTACA
. : . : . : . : . : . :
rJMSF021J02+ ATCACTGGAATTGCAGCACTATTCCCCTACTTCAACGAGGTGGTGGGAGTTGCAGGAGCA
rJMSF050J07+ GTCACCGGAATCGCGGTACTATTCCCCTATTTCAACCAGGTGGTGGGATTTTCAGGAGCA
rJMSF044C14+ GTCACCGGAATCGCGGTACTATTCCCCTATTTCAACCAGGTGGTGGGATTTTCAGGAGCA
____________________________________________________________
consensus GTCACCGGAATCGCGGTACTATTCCCCTATTTCAACCAGGTGGTGGGATTTTCAGGAGCA
. : . : . : . : . : . :
rJMSF021J02+ TTAACCTTTTGGCCAGTTATAGTGTATTTCCCAGTGGAGATGTACCTGAAGCAGAAAAGA
rJMSF050J07+ ATAACCTTTTGGCCAGTAGTAGTGTATTTCCCGGTGGAGATGTACCTAAAGCAGAAAAGA
rJMSF044C14+ ATAACCTTTTGGCCAGTAGTAGTGTATTTCCCGGTGGAGATGTACCTAAAGCAGAAAAGA
____________________________________________________________
consensus ATAACCTTTTGGCCAGTAGTAGTGTATTTCCCGGTGGAGATGTACCTAAAGCAGAAAAGA
. : . : . : . : . : . :
rJMSF021J02+ ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATTCTCCTATACATGCTTGGTT
rJMSF050J07+ ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATATACCTATATATGTTTGGTT
rJMSF044C14+ ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATATACCTATATATGTTTGGTT
____________________________________________________________
consensus ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATATACCTATATATGTTTGGTT
. : . : . : . : . : . :
rJMSF021J02+ GTCATCCTATTCGCCTTTGTAGGCTCTGTTAGAGGGTTGATAGTTGCAAGGTTAAGCTAG
rJMSF050J07+ GTCATTGTATTTGCCTTTGTAGGCTCTGTCAGAGGGTTGATAGTTGCAAGGTTCAGCTAG
rJMSF044C14+ GTCATTGTATTTGCCTTTGTAGGCTCTGNCAGAGGGTTGATAGTTGCAAGGTTCAGCTAG
____________________________________________________________
consensus GTCATTGTATTTGCCTTTGTAGGCTCTGTCAGAGGGTTGATAGTTGCAAGGTTCAGCTAG
. : . : . : . : . : . :
rJMSF021J02+ AAACTCTCCA
rJMSF050J07+ AGACTCTCCACCCTCCAGAAGGATGTTTTATAGAGTATACTCTGTAAGAGGGTTGGTTGG
rJMSF044C14+ AGACTCTCCACCCTCCAGAAGGATGTTTTATAGAGTATACTCTGTAAGAGGGTTGGTTGG
____________________________________________________________
consensus AGACTCTCCACCCTCCAGAAGGATGTTTTATAGAGTATACTCTGTAAGAGGGTTGGTTGG
. : . : . : . : . : . :
rJMSF050J07+ CTGGTGTCATGTTCTAGTTCAGTCCAATAGCAAATGTAAATACTCTGTGTCTCTGTTAAA
rJMSF044C14+ CTGGTGTCATGTTCTAGTTCAGTCCAATAGCAAATGTAAATACTCTGTGTCTCTGTTAAA
____________________________________________________________
consensus CTGGTGTCATGTTCTAGTTCAGTCCAATAGCAAATGTAAATACTCTGTGTCTCTGTTAAA
. : . : . : . : . : . :
rJMSF050J07+ ATTTCTTGTGTTTAAGGAAGAGTATGGCATGCAAAATGC
rJMSF044C14+ ATTTCTTGTGTTTAAGGAAGAGTATGGCATGCAAAATGCTGTTAACAACTCTTGCCTAAA
____________________________________________________________
consensus ATTTCTTGTGTTTAAGGAAGAGTATGGCATGCAAAATGCTGTTAACAACTCTTGCCTAAA