Contig 002969:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021J02Sequence693006741 (4)ref|XP_004244012.1|6e-39PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]782002969 (3)ref|XP_009762111.1|3e-103PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref
JMSF044C14Sequence648006741 (4)ref|XP_004244012.1|6e-74PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]760002969 (3)ref|XP_009762111.1|6e-90PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref
JMSF050J07Sequence692006741 (4)ref|XP_004244012.1|1e-67PREDICTED: probable amino acid permease 7 isoform X1 [Solanum lycopersicum]758002969 (3)ref|XP_009762111.1|4e-94PREDICTED: probable amino acid permease 7 isoform X1 [Nicotiana sylvestris] ref

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF021J02+ CGGAGCAGGACTAGGCTTAGCAAAAGTAATGAGAANGAGAAATAAAGGGTA
                      ____________________________________________________________
consensus CGGAGCAGGACTAGGCTTAGCAAAAGTAATGAGAANGAGAAATAAAGGGTA
 
. : . : . : . : . : . :
rJMSF021J02+ GCATTAGGGGATTGCCTTCGGAGAATGCAGGATACATTGAAGGAAACTCNTCCGGAAAAG
                      ____________________________________________________________
consensus GCATTAGGGGATTGCCTTCGGAGAATGCAGGATACATTGAAGGAAACTCNTCCGGAAAAG
 
. : . : . : . : . : . :
rJMSF021J02+ GTGACCATGAGAAAAGCATCAACAATAGCGGTCTGCATTACGACTTTCTTCTACCTATGT
rJMSF050J07+ TGACCATGAAAAAAGCGTCANCAATAGCAGTTTGCATTACAACTCTCTTCTACCTATGT
rJMSF044C14+ CAATAGCAGTTTGCATTACAACTCTCTTCTACCTATGT
                      ____________________________________________________________
consensus GTGACCATGAGAAAAGCGTCAACAATAGCAGTTTGCATTACAACTCTCTTCTACCTATGT
 
. : . : . : . : . : . :
rJMSF021J02+ TGTGGAGGGTTTGGTTATGCAGCCTTTGGCACCAACACACCCGGGAACCTTTTGACAGGA
rJMSF050J07+ TGTGGCGGATTTGGTTATGCAGCCTTTGGCACCAACACGCCCGGGAACCTTTTGACAGGA
rJMSF044C14+ TGTGGCGGATTTGGTTATGCAGCCTTTGGCACCAACACGCCCGGGAACCTTTTGACAGGA
                      ____________________________________________________________
consensus TGTGGCGGATTTGGTTATGCAGCCTTTGGCACCAACACGCCCGGGAACCTTTTGACAGGA
 
. : . : . : . : . : . :
rJMSF021J02+ TTTGGTTTCTATGAGCCATACTGGCTAGTTGATATCGCAAATGCAGCTGTCATTGTTCAT
rJMSF050J07+ TTCGGTTTCTTTGAGCCATACTGGCTAGTTGATATCGCAAACGCATGTGTCGTGGTTCAT
rJMSF044C14+ TTCGGTTTCTTTGAGCCATACTGGCTAGTTGATATCGCAAACGCATGTGTCGTGGTTCAT
                      ____________________________________________________________
consensus TTCGGTTTCTTTGAGCCATACTGGCTAGTTGATATCGCAAACGCATGTGTCGTGGTTCAT
 
. : . : . : . : . : . :
rJMSF021J02+ CTTGTCGGAGCATATCAGGTATACACCCAGACATTTTATGCAAATGTTGAGAGCTGGCTT
rJMSF050J07+ CTTGTTGGAGCATATCAGGTATTCAGCCAGCCATTGTTTGAAAATTTTGAGAGCTGGCTT
rJMSF044C14+ CTTGTTGGAGCATATCAGGTATTCAGCCAGCCATTGTTTGAAAATTTTGAGAGCTGGCTT
                      ____________________________________________________________
consensus CTTGTTGGAGCATATCAGGTATTCAGCCAGCCATTGTTTGAAAATTTTGAGAGCTGGCTT
 
. : . : . : . : . : . :
rJMSF021J02+ GGCAGGAAATTCCCAGAGAGTGAAGTTGTACACAGGGATTATGATGTGAAGCTCTTATGG
rJMSF050J07+ GGGAGGAAATTCCCGGAGAGTGACATTGTGCACAAAGATTATGATCTGAAGCGGTTGTTG
rJMSF044C14+ GGGAGGAAATTCCCGGAGAGTGACATTGTGCACAAAGATTATGATCTGAAGCGGTTATTG
                      ____________________________________________________________
consensus GGGAGGAAATTCCCGGAGAGTGACATTGTGCACAAAGATTATGATCTGAAGCGGTTATTG
 
. : . : . : . : . : . :
rJMSF021J02+ TTACCAGGTTTTAGGTTGAACATAGTGAGATTGGTTTTCCGAACTGCGTATGTTGCTATA
rJMSF050J07+ TTACCAGGTTTTAGGTTGAATTTACTGAGATTGGTTTTCCGAACTGCTTATGTTGCTACA
rJMSF044C14+ TTACCAGGTTTTAGGTTGAATTTACTGAGATTGGTTTTCCGAACTGCTTATGTTGCTACA
                      ____________________________________________________________
consensus TTACCAGGTTTTAGGTTGAATTTACTGAGATTGGTTTTCCGAACTGCTTATGTTGCTACA
 
. : . : . : . : . : . :
rJMSF021J02+ ATCACTGGAATTGCAGCACTATTCCCCTACTTCAACGAGGTGGTGGGAGTTGCAGGAGCA
rJMSF050J07+ GTCACCGGAATCGCGGTACTATTCCCCTATTTCAACCAGGTGGTGGGATTTTCAGGAGCA
rJMSF044C14+ GTCACCGGAATCGCGGTACTATTCCCCTATTTCAACCAGGTGGTGGGATTTTCAGGAGCA
                      ____________________________________________________________
consensus GTCACCGGAATCGCGGTACTATTCCCCTATTTCAACCAGGTGGTGGGATTTTCAGGAGCA
 
. : . : . : . : . : . :
rJMSF021J02+ TTAACCTTTTGGCCAGTTATAGTGTATTTCCCAGTGGAGATGTACCTGAAGCAGAAAAGA
rJMSF050J07+ ATAACCTTTTGGCCAGTAGTAGTGTATTTCCCGGTGGAGATGTACCTAAAGCAGAAAAGA
rJMSF044C14+ ATAACCTTTTGGCCAGTAGTAGTGTATTTCCCGGTGGAGATGTACCTAAAGCAGAAAAGA
                      ____________________________________________________________
consensus ATAACCTTTTGGCCAGTAGTAGTGTATTTCCCGGTGGAGATGTACCTAAAGCAGAAAAGA
 
. : . : . : . : . : . :
rJMSF021J02+ ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATTCTCCTATACATGCTTGGTT
rJMSF050J07+ ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATATACCTATATATGTTTGGTT
rJMSF044C14+ ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATATACCTATATATGTTTGGTT
                      ____________________________________________________________
consensus ATAGAATCCTGGACGACCATCAAGATCGTTCTTCGTACATATACCTATATATGTTTGGTT
 
. : . : . : . : . : . :
rJMSF021J02+ GTCATCCTATTCGCCTTTGTAGGCTCTGTTAGAGGGTTGATAGTTGCAAGGTTAAGCTAG
rJMSF050J07+ GTCATTGTATTTGCCTTTGTAGGCTCTGTCAGAGGGTTGATAGTTGCAAGGTTCAGCTAG
rJMSF044C14+ GTCATTGTATTTGCCTTTGTAGGCTCTGNCAGAGGGTTGATAGTTGCAAGGTTCAGCTAG
                      ____________________________________________________________
consensus GTCATTGTATTTGCCTTTGTAGGCTCTGTCAGAGGGTTGATAGTTGCAAGGTTCAGCTAG
 
. : . : . : . : . : . :
rJMSF021J02+ AAACTCTCCA
rJMSF050J07+ AGACTCTCCACCCTCCAGAAGGATGTTTTATAGAGTATACTCTGTAAGAGGGTTGGTTGG
rJMSF044C14+ AGACTCTCCACCCTCCAGAAGGATGTTTTATAGAGTATACTCTGTAAGAGGGTTGGTTGG
                      ____________________________________________________________
consensus AGACTCTCCACCCTCCAGAAGGATGTTTTATAGAGTATACTCTGTAAGAGGGTTGGTTGG
 
. : . : . : . : . : . :
rJMSF050J07+ CTGGTGTCATGTTCTAGTTCAGTCCAATAGCAAATGTAAATACTCTGTGTCTCTGTTAAA
rJMSF044C14+ CTGGTGTCATGTTCTAGTTCAGTCCAATAGCAAATGTAAATACTCTGTGTCTCTGTTAAA
                      ____________________________________________________________
consensus CTGGTGTCATGTTCTAGTTCAGTCCAATAGCAAATGTAAATACTCTGTGTCTCTGTTAAA
 
. : . : . : . : . : . :
rJMSF050J07+ ATTTCTTGTGTTTAAGGAAGAGTATGGCATGCAAAATGC
rJMSF044C14+ ATTTCTTGTGTTTAAGGAAGAGTATGGCATGCAAAATGCTGTTAACAACTCTTGCCTAAA
                      ____________________________________________________________
consensus ATTTCTTGTGTTTAAGGAAGAGTATGGCATGCAAAATGCTGTTAACAACTCTTGCCTAAA