Contig 002967:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042M10Sequence842014740gb|AGC24022.1|4e-73coat protein, partial [Rhabdovirus YHG-2013]740002967 (2)gb|AFK43045.1|2e-15unknown [Lotus japonicus]
JMSF043P10Sequence694015836ref|XP_010677176.1|121PREDICTED: uncharacterized protein LOC104892855 [Beta vulgaris subsp. vulgaris]605002967 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+                                            GCTGAGTGTGACACTCAACGTGCGCA
                      ____________________________________________________________
consensus                                               GCTGAGTGTGACACTCAACGTGCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          GTTCAAAGATCTTACAGGCACTGCACACTGGGGAATTTGCTAAACAGACAAACGCTCTGG
                      ____________________________________________________________
consensus             GTTCAAAGATCTTACAGGCACTGCACACTGGGGAATTTGCTAAACAGACAAACGCTCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          CTGAAATGGTTAGAATGATGACGTCTAAAGAGCCGGCCTATGCAAGGAGGATGTGAGATT
                      ____________________________________________________________
consensus             CTGAAATGGTTAGAATGATGACGTCTAAAGAGCCGGCCTATGCAAGGAGGATGTGAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          TGGAAGAATCTTTAATGAGAATTTCATGAGTAGTCTTCGGACCAAAGCGTGCCCGAGATT
                      ____________________________________________________________
consensus             TGGAAGAATCTTTAATGAGAATTTCATGAGTAGTCTTCGGACCAAAGCGTGCCCGAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          TGTGTACATATTAGCCAGCATGTTGAAGAGAGAGGACCCTGCAAAATGTGGGAATATCCT
                      ____________________________________________________________
consensus             TGTGTACATATTAGCCAGCATGTTGAAGAGAGAGGACCCTGCAAAATGTGGGAATATCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          TCATATTGTACCTCTTAGCAGCTTAAGTGAAGATATCAAGCTGAGATGTCAGGCCGTTGC
                      ____________________________________________________________
consensus             TCATATTGTACCTCTTAGCAGCTTAAGTGAAGATATCAAGCTGAGATGTCAGGCCGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          CAAGATGCTGTTAAACCAAATTCGTAACCCTGTTACTCTCCCAATTCAACAAATCGAAGA
rJMSF043P10+                                                             AATCGAAGA
                      ____________________________________________________________
consensus             CAAGATGCTGTTAAACCAAATTCGTAACCCTGTTACTCTCCCAATTCAACAAATCGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          TGATAGTGTACCCAAAGGGGTGGAACCAGATTATGAGAGGGATTTGAAAGAGCTGGGTAA
rJMSF043P10+          TGATAGTGTACCCAANGGGGAGGAACCAGATTATGAGAGGGATTTGAAAGATTTGGGTAA
                      ____________________________________________________________
consensus             TGATAGTGTACCCAAAGGGGTGGAACCAGATTATGAGAGGGATTTGAAAGATTTGGGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          GTGCTGTGAAACCGTGGCAGACGCCATCACAAACTTAGAAAGAAATATCACAGAAGTGTC
rJMSF043P10+          GTGCTGTGCAACCGTGGCCGTCGCCATCATAAACTTAAAAAGAAATATCACAGAAGTGTC
                      ____________________________________________________________
consensus             GTGCTGTGCAACCGTGGCCGTCGCCATCATAAACTTAGAAAGAAATATCACAGAAGTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          TAAAAAATACCCAGACTCGCCACAAGTAAACCGTTATAAGGAAATGGCTACT---ATTTT
rJMSF043P10+          AGAAAAATACCCAGACTCGGCACAAGTAAACAGGGTTAAGGCAATGGCTACTACAATTTT
                      ____________________________________________________________
consensus             TGAAAAATACCCAGACTCGGCACAAGTAAACCGTTTTAAGGCAATGGCTACTACAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          GATGGGTCACAGCTCTTTAACCCAAAAGGCTAACCAGCTTAAGGCCATGGCTGCTAACGA
rJMSF043P10+          TATGGGTAACAGCTCTTTAACCCAAAAGATTAACCAGCTTAAGTCCATGGCTACT----A
                      ____________________________________________________________
consensus             TATGGGTCACAGCTCTTTAACCCAAAAGGTTAACCAGCTTAAGTCCATGGCTGCTAACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          TACTTGTGGATAAAACTTCTGGCACCAAACAGTTTGAGGTAAGTTAGATTGTCACTCAAG
rJMSF043P10+          CACTTGTGGATAAAACTTCTGGCACCAAACAGTTTGAGGTCAGTCAGATTGTCACTCAAG
                      ____________________________________________________________
consensus             TACTTGTGGATAAAACTTCTGGCACCAAACAGTTTGAGGTCAGTTAGATTGTCACTCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M10+          ATGAGTGTTTGTTTGCATAAATGGATTGATTGTT                          
rJMSF043P10+          ATGAATGTACCTTTGCATAAATGGATTGATTGTTCATCATAGAAACAGAATGGTAGTCAA
                      ____________________________________________________________
consensus             ATGAGTGTTTGTTTGCATAAATGGATTGATTGTTCATCATAGAAACAGAATGGTAGTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043P10+          TATTTTGTAGGAAATGATTCTTGCCTCTTGAATTTTCCCTCATATTTTCCCTCTTGATGT
                      ____________________________________________________________
consensus             TATTTTGTAGGAAATGATTCTTGCCTCTTGAATTTTCCCTCATATTTTCCCTCTTGATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043P10+          GGGTGGCATCCATTCATTGGGTGTCCATGAATTGGTGAGTCACCACTAATTAAAAAGAGA
                      ____________________________________________________________
consensus             GGGTGGCATCCATTCATTGGGTGTCCATGAATTGGTGAGTCACCACTAATTAAAAAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043P10+          ATTTAGTATTTAATTAGATAATGTCATATTAATAGGGATGGGATGGATTAGAGGGAAAAA
                      ____________________________________________________________
consensus             ATTTAGTATTTAATTAGATAATGTCATATTAATAGGGATGGGATGGATTAGAGGGAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043P10+          TATGAGTGATCTAGCATTACTTTATTTTGTATTTATACCGTTTGACTGAAAATATGATCT
                      ____________________________________________________________
consensus             TATGAGTGATCTAGCATTACTTTATTTTGTATTTATACCGTTTGACTGAAAATATGATCT