Contig 002966:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043O08Sequence767002966 (2)emb|CDP14821.1|2e-45unnamed protein product [Coffea canephora]716002966 (2)emb|CDP00341.1|1e-42unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF043O08-                                                       GACGCTTTCTTCTCCT
                      ____________________________________________________________
consensus                                                         GACGCTTTCTTCTCCT
 
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JMSF043O08-           TACACTCTCTCTTGCTTCACTTTCGTCGCTCGTCTTCACCGATGAGACCACTCCCGATTT
                      ____________________________________________________________
consensus             TACACTCTCTCTTGCTTCACTTTCGTCGCTCGTCTTCACCGATGAGACCACTCCCGATTT
 
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JMSF043O08-           CTTCTCCATCATTTTCCAATGGCCAAAGGCAAAATGTGAAAGCAAAGAAGGTTGTTGCCT
rJMSF043O08+              TCCATCATTTTCCAATGGCCAAAGGCAAAATGTGAAAGCAAAGAAGGTTGTTGCCT
                      ____________________________________________________________
consensus             CTTCTCCATCATTTTCCAATGGCCAAAGGCAAAATGTGAAAGCAAAGAAGGTTGTTGCCT
 
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JMSF043O08-           CCCCAAGAAAGGAAAGCCTGTGTTAAATGATTTCATCATTTCTGAGTTCAAACCAGTTTA
rJMSF043O08+          CCCCAAGAAAGGAAAGCCTGTGTTAAATGATTTCATCATTTCTGAGTTCAAACCAGTTTA
                      ____________________________________________________________
consensus             CCCCAAGAAAGGAAAGCCTGTGTTAAATGATTTCATCATTTCTGAGTTCAAACCAGTTTA
 
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JMSF043O08-           TGCCCAAGAGGGACTGGTTCCAGAAAATTGCACAACCACAACCAAATTCCAGCCATCTAA
rJMSF043O08+          TGCCCAAGAGGGACTGGTTCCAGAAAATTGCACAACCACAACCAAATTCCAGCCATCTAA
                      ____________________________________________________________
consensus             TGCCCAAGAGGGACTGGTTCCAGAAAATTGCACAACCACAACCAAATTCCAGCCATCTAA
 
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JMSF043O08-           GATTGCAGATTTAGTTCCAAGTTTGGAAAGGTATTGGCCATCTCTGACCTGCCCTAGAAG
rJMSF043O08+          GATTGCAGATTTAGTTCCAAGTTTGGAAAGGTATTGGCCATCTCTGACCTGCCCTAGAAG
                      ____________________________________________________________
consensus             GATTGCAGATTTAGTTCCAAGTTTGGAAAGGTATTGGCCATCTCTGACCTGCCCTAGAAG
 
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JMSF043O08-           GGACAGTAAGAAGTTATGGAAAGAAGAATGGGTGAGGTATGGAAGTTGTGCAGAATCAGT
rJMSF043O08+          GGACAGTAAGAAGTTATGGAAAGAAGAATGGGTGAGGTATGGAAGTTGTGCAGAATCAGT
                      ____________________________________________________________
consensus             GGACAGTAAGAAGTTATGGAAAGAAGAATGGGTGAGGTATGGAAGTTGTGCAGAATCAGT
 
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JMSF043O08-           TGTTGATCTGCATGATTACTTTGCAGCTGCCCTAAGAATACAAAAGCAAATTAATCTCCT
rJMSF043O08+          TGTTGATCTGCATGATTACTTTGCAGCTGCCCTAAGAATACAAAAGCAAATTAATCTCCT
                      ____________________________________________________________
consensus             TGTTGATCTGCATGATTACTTTGCAGCTGCCCTAAGAATACAAAAGCAAATTAATCTCCT
 
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JMSF043O08-           CAAACTTTTGGGTGATGCAGGAATCATACCAAACGGAAAGTATTATCCCGGGGAGGCGAT
rJMSF043O08+          CAAACTTTTGGGTGATGCAGGAATCATACCAAACGGAAAGTATTATCCCGGGGAGGCGAT
                      ____________________________________________________________
consensus             CAAACTTTTGGGTGATGCAGGAATCATACCAAACGGAAAGTATTATCCCGGGGAGGCGAT
 
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JMSF043O08-           CAATGAAGCGGTAAGGAAAGCGGGATTAGGGGACGCGGCAGTAACATGCCGAGAAGACGA
rJMSF043O08+          CAATGAAGCGGTAAGGAAAGCGGGATTAGGGGACGCGGCAGTAACATGCCGAGAAGACGA
                      ____________________________________________________________
consensus             CAATGAAGCGGTAAGGAAAGCGGGATTAGGGGACGCGGCAGTAACATGCCGAGAAGACGA
 
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JMSF043O08-           GGATGGTTTGTACACCATTCTGGACCAAGTCATTTTGTGTGCTACTCGACTGGGCAACAA
rJMSF043O08+          GGATGGTTTGTACACCATTCTGGACCAAGTCATTTTGTGTGCTACTCGACTGGGCAACAA
                      ____________________________________________________________
consensus             GGATGGTTTGTACACCATTCTGGACCAAGTCATTTTGTGTGCTACTCGACTGGGCAACAA
 
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JMSF043O08-           GTTTACATGCCCCGGCGCTTTCTGGATTTGTGATAGCAGAAATGGCAATAAAGTTAAATT
rJMSF043O08+          GTTTACATGCCCCGGCGCTTTCTGGATTTGTGATAGCAGAAATGGCAATAAAGTTAAATT
                      ____________________________________________________________
consensus             GTTTACATGCCCCGGCGCTTTCTGGATTTGTGATAGCAGAAATGGCAATAAAGTTAAATT
 
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JMSF043O08-           CCTCAAACCTTAATTAATTACGTACTTAGAGGGAATAAGTTATTGGTACATGGCTATTCG
rJMSF043O08+          CCTCAAACCTTAATTAATTACGTACTTAGAGGGAATAAGTTATTGGTACATGGCTATTCG
                      ____________________________________________________________
consensus             CCTCAAACCTTAATTAATTACGTACTTAGAGGGAATAAGTTATTGGTACATGGCTATTCG
 
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JMSF043O08-           CCATGCAATAGTTTTAATTTGTTGTACCATA                             
rJMSF043O08+          CCATGCAATAGTTTTAATTTGTTGTACCATAGTGATGAAAATAAAGAAATAAATCATGTA
                      ____________________________________________________________
consensus             CCATGCAATAGTTTTAATTTGTTGTACCATAGTGATGAAAATAAAGAAATAAATCATGTA