Contig 002965:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K18Sequence420009158 (6)689002965 (3)emb|CDP05474.1|4e-27unnamed protein product [Coffea canephora]
JMSF004H16Sequence388009158 (6)ref|XP_009608506.1|1e-58PREDICTED: 65-kDa microtubule-associated protein 6-like isoform X1 [Nicotiana t462002965 (3)emb|CDP05474.1|1e-37unnamed protein product [Coffea canephora]
JMSF043N20Sequence750002965 (3)emb|CDP05474.1|3e-28unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+                                                                     A
rJMSF004H16+                                              AAAAAGAATTGAGGTATGGTTCTA
rJMSF043N20+                                        CACTGAAAAAAGAATTGAGGTATGGTTCTA
                      ____________________________________________________________
consensus                                           CACTGAAAAAAGAATTGAGGTATGGTTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          AACCAAGTCCAAGGAGAAGCNATAGCTTTAGGAAGACAAAT-GGATTCCATACTAACGGA
rJMSF004H16+          AACCAAGTCCAAGGAGAAGCAATAGCTTTAGGAAGACAAAT-GGATTCCATACTAACGGA
rJMSF043N20+          AACCAAGTCCAAGGAGAAGCAATAGCTTTAGGAAGACAAATGGGATTCCATACTAACGGA
                      ____________________________________________________________
consensus             AACCAAGTCCAAGGAGAAGCAATAGCTTTAGGAAGACAAAT-GGATTCCATACTAACGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          TGTGTAACCCCCTCACCACGTCGGAATTCTGCTGGCTGTCAAACCCCCGAGCTTTTAACA
rJMSF004H16+          TGTGTAACCCCCTCACCACGTCGGAATTCTGCTGGCTGTCAAACCCCCGAGCTTTTAACA
rJMSF043N20+          TGTGTAACCCCCTCACCACGTCGGAATTCTGCTGGCTGTCAAACCCCCGAGCTTTTAACA
                      ____________________________________________________________
consensus             TGTGTAACCCCCTCACCACGTCGGAATTCTGCTGGCTGTCAAACCCCCGAGCTTTTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          CCCCGCTCATACTCTGGGCGACAGAATGGGTATTTCAGAGAAACTAGAAGGCNTTCAACT
rJMSF004H16+          CCCCGCTCATACTCTGGGCGACAGAATGGGTATTTCAGAGAAACTAGAAGGCTTTCAACT
rJMSF043N20+          CCCCGCTCATACTCTGGGCGACAGAATGGGTATTTCAGAGAAACTAGAAGGCTTTCAACT
                      ____________________________________________________________
consensus             CCCCGCTCATACTCTGGGCGACAGAATGGGTATTTCAGAGAAACTAGAAGGCTTTCAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          GCCCCTCTGAATNTTGTGGCAATAGCAAAGGAGGATANGATGTCTTTTTCATCCGTTTCT
rJMSF004H16+          GCCCCTCTGAATTTTGTGGCAATAGCAAAGGAGGATATGATGTCTTTTTCATCCGTTTCT
rJMSF043N20+          GCCCCTCTGAATTTTGTGGCAATAGCAAAGGAGGATATGATGTCTTTTTCATCCGTTTCT
                      ____________________________________________________________
consensus             GCCCCTCTGAATTTTGTGGCAATAGCAAAGGAGGATATGATGTCTTTTTCATCCGTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          GGTTCTGAACCAGAGTCTCCACTTCAACCCNGAATATGGAATTTAAACTGGGTGATACCA
rJMSF004H16+          GGTTCTGAACCAGAGTCTCCACTTCAACCCTGAATATGGAATTTAAACTGGGTGATACCA
rJMSF043N20+          GGTTCTGAACCAGAGTCTCCACTTCAACCCTGAATATGGAATTTAAACTGGGTGATACCA
                      ____________________________________________________________
consensus             GGTTCTGAACCAGAGTCTCCACTTCAACCCTGAATATGGAATTTAAACTGGGTGATACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          AATTATGGTTTGCTGTGGATTCACTCAGTAAGTAGGCCAACATGACTGGGAAGGAAGTAC
rJMSF004H16+          AATTATGGTTTGCTGTGGATTCACTCAGTAAGTAGGCCAACATGACTGGGAAGGAAGTAC
rJMSF043N20+          AATTATGGTTTGCTGTGGATTCACTCAGTAAGTAGGCCAACATGACTGGGAAGGAAGTAC
                      ____________________________________________________________
consensus             AATTATGGTTTGCTGTGGATTCACTCAGTAAGTAGGCCAACATGACTGGGAAGGAAGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          TGAAACCTGTGAATATGAAAGAGGTATGTTTAGGGGATTGTAGACACAGTGGTAACAGGA
rJMSF004H16+          TGAAACCTGTGAATATGAAAGAGGTATGTTTAGGGGATTGTAGACA              
rJMSF043N20+          TGAAACCTGTGAATATGAAAGAGGTATGTTTAGGGGATTGTAGACACAGTGGTAACAGGA
                      ____________________________________________________________
consensus             TGAAACCTGTGAATATGAAAGAGGTATGTTTAGGGGATTGTAGACACAGTGGTAACAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          GTGCAGTGCAGGAAAGTGGTATACTGAGTGAGAGATTAGTGNGGATATGAATTAGTTAAA
rJMSF043N20+          GTGCAGTGCAGGAAAGTGGTATACTGAGTGAGAGATTAGTGTGGATATGAATTAGTTAAA
                      ____________________________________________________________
consensus             GTGCAGTGCAGGAAAGTGGTATACTGAGTGAGAGATTAGTGTGGATATGAATTAGTTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          AGTGCAAAAATGTTGAGTATGGGAGACTACTACTTAGTACTGACCGACCATAATATGTNT
rJMSF043N20+          AGTGCAAAAATGTTGAGTATGGGAGACTACTACTTAGTACTGACCGACCATAATATGTGT
                      ____________________________________________________________
consensus             AGTGCAAAAATGTTGAGTATGGGAGACTACTACTTAGTACTGACCGACCATAATATGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          TATTTAAGGATTTGGTTTTTNGATGTACATATAATTGTGTNATTGGTTTGACTTCTGATT
rJMSF043N20+          TATTTAAGGATTTGGTTTTTGGATGTACATATAATTGTGTTATTGGTTTGACTTTTGATT
                      ____________________________________________________________
consensus             TATTTAAGGATTTGGTTTTTGGATGTACATATAATTGTGTTATTGGTTTGACTTTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          GATGTGTAGTAGGTGTCTGGTCGTATCTATCTATCTATCTATCTATCTATCTANGTAGTA
rJMSF043N20+          GATGTGTAGTAGGTGTCTGGTTGTATCTATCTATCTATCTATCTATCTATCTATGTAGTA
                      ____________________________________________________________
consensus             GATGTGTAGTAGGTGTCTGGTTGTATCTATCTATCTATCTATCTATCTATCTATGTAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001K18+          TNTAGGGCTCTCAAGA                                            
rJMSF043N20+          TGTAGGGCTCTCAAGACTTGTACTCCCCAGGCCTGTAGTGAAACAGANCAAGTTTGTATG
                      ____________________________________________________________
consensus             TGTAGGGCTCTCAAGACTTGTACTCCCCAGGCCTGTAGTGAAACAGANCAAGTTTGTATG