Contig 002963:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043C12Sequence693002963 (3)ref|XP_009610625.1|61.2PREDICTED: uncharacterized protein LOC104104285 [Nicotiana tomentosiformis]761015145ref|XP_006365380.1|1e-12PREDICTED: mediator of RNA polymerase II transcription subunit 28-like isoform
JMSF043F13Sequence731002963 (3)ref|XP_009610625.1|70.9PREDICTED: uncharacterized protein LOC104104285 [Nicotiana tomentosiformis]755002963 (3)

Alignment

This contig is upended


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JMSF043F13-                                                          GGGGGAGTAGTCA
                      ____________________________________________________________
consensus                                                            GGGGGAGTAGTCA
 
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JMSF043F13-           ACGGAACTGAAACCCTTTTGCATCCCCATTTCTTACCATCCGATCTTTAAGCATCTTAGT
                      ____________________________________________________________
consensus             ACGGAACTGAAACCCTTTTGCATCCCCATTTCTTACCATCCGATCTTTAAGCATCTTAGT
 
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JMSF043F13-           GTGAGGTTGAAGTCACCAGGGACGGCGAAGACGTCACTCACCCCTATCTGCACAAGGTGG
                      ____________________________________________________________
consensus             GTGAGGTTGAAGTCACCAGGGACGGCGAAGACGTCACTCACCCCTATCTGCACAAGGTGG
 
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JMSF043F13-           TGAGCGAGGTGGCGACAGACTGTAGCAGGGATTCGTGGATCAAAGAGTGGATATGAAAAT
                      ____________________________________________________________
consensus             TGAGCGAGGTGGCGACAGACTGTAGCAGGGATTCGTGGATCAAAGAGTGGATATGAAAAT
 
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JMSF043F13-           GCCTTCTCGATGCAATTAGGGCTCAATTTTAAAAAATCCTACCTATTTCTGGCAAGGCGC
JMSF043C12+                                                            TGGCAAGGCGC
                      ____________________________________________________________
consensus             GCCTTCTCGATGCAATTAGGGCTCAATTTTAAAAAATCCTACCTATTTCTGGCAAGGCGC
 
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JMSF043F13-           ACATCGGATCGTTAGAATCAAGGAATGTGCTCATCAAATTTACTGAAGAAATCGATTGTA
JMSF043C12+           ACATCGGATCGTTAGAATCAAGGAATGTGCTCATCAAATTTACTGAAGAAATCGATTGTA
                      ____________________________________________________________
consensus             ACATCGGATCGTTAGAATCAAGGAATGTGCTCATCAAATTTACTGAAGAAATCGATTGTA
 
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JMSF043F13-           CATGAATTTTGGCGAAAGGCAGAGTAGAAATCGAAGGAAAATGGGCCAAGTTCGCTCGTT
JMSF043C12+           CATGAATTTTGGCGAAAGGCAGAGTAGAAATCGAAGGAAAATGGGCCAAGTTCGCTCGTT
                      ____________________________________________________________
consensus             CATGAATTTTGGCGAAAGGCAGAGTAGAAATCGAAGGAAAATGGGCCAAGTTCGCTCGTT
 
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JMSF043F13-           GGTCGCCGGATTAGAGTTCGAAGAGAGATTTACCGTTCGCAGCCATATGGCTTAAGTTGC
JMSF043C12+           GGTCGCCGGATTAGAGTTCGAAGAGAGATTTACCGTTCGCAGCCATATGGCTTAAGTTGC
                      ____________________________________________________________
consensus             GGTCGCCGGATTAGAGTTCGAAGAGAGATTTACCGTTCGCAGCCATATGGCTTAAGTTGC
 
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JMSF043F13-           CAAAATTGCCTTATCATCTTTTTGATCCACGGTTCGTCGAACAAGGCCAAGTACGGCTCG
JMSF043C12+           CAAAATTGCCTTATCATCTTTTTGATCCACGGTTCGTCGAACAAGGCCAAGTACGGCTCG
                      ____________________________________________________________
consensus             CAAAATTGCCTTATCATCTTTTTGATCCACGGTTCGTCGAACAAGGCCAAGTACGGCTCG
 
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JMSF043F13-           AGTGAAGGTGGAGTTGGATTTGCTTCAGGATCAGGATGAAAAGATTTGGATTGAGGTCGT
JMSF043C12+           AGTGAAGGTGGAGTTGGATTTGCTTCAGGATCAGGATGAAAAGATTTGGATTGAGGTCGT
                      ____________________________________________________________
consensus             AGTGAAGGTGGAGTTGGATTTGCTTCAGGATCAGGATGAAAAGATTTGGATTGAGGTCGT
 
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JMSF043F13-           GAATCAGGAAGGAGAAGTGCGTGGATTTGGCAGAGGATTGAGTATGAACACATTCCTAAA
JMSF043C12+           GAATCAGGAAGGAGAAGTGCGTGGATTTGGCAGAGGATTGAGTATGAACACATTCCTAAA
                      ____________________________________________________________
consensus             GAATCAGGAAGGAGAAGTGCGTGGATTTGGCAGAGGATTGAGTATGAACACATTCCTAAA
 
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JMSF043F13-           TTCTGTAGCGATTGTAGGCGATTTGGTCACCTGCTGCTTGAATGTCGTCGAAATCGAGGA
JMSF043C12+           TTCTGTAGCGATTGTAGGCGATTTGGTCACCTGCTGCTTGAATGTCGTCGAAATCGAGGA
                      ____________________________________________________________
consensus             TTCTGTAGCGATTGTAGGCGATTTGGTCACCTGCTGCTTGAATGTCGTCGAAATCGAGGA
 
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JMSF043F13-           AATTGGCCGCCAACGGTGTTGACGGAGAAGAGAGATGAGGGTGGCAGAGTCATAGCAG  
JMSF043C12+           AATTGGCCGCCAACGGTGTTGACGGAGAAGAGAGATGAGGGTGGCAGAGTCATAGCAGAG
rJMSF043F13+                                   AGAAGAGAGATGAGGGTGGCAGAGTCATAGCAGAG
                      ____________________________________________________________
consensus             AATTGGCCGCCAACGGTGTTGACGGAGAAGAGAGATGAGGGTGGCAGAGTCATAGCAGAG
 
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JMSF043C12+           GTGGAGGTGGATCGTTGGAGTGAGACGCTGCCGGCTGAGAGAGAGTTGGAAACCGCTGCC
rJMSF043F13+          GNGGAGGTGGATCGTTGGAGTGAGACGCTGCCGGCTGAGAGAGAGTTGGAAACCGCTGCC
                      ____________________________________________________________
consensus             GTGGAGGTGGATCGTTGGAGTGAGACGCTGCCGGCTGAGAGAGAGTTGGAAACCGCTGCC
 
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JMSF043C12+           TGCTTGCCGATCTAGAGGCGAGTGAAGAGGTCTCTAATGAACAGTGCTAAATCTTCCGGG
rJMSF043F13+          TGCTTGCCGATCTAGAGGCGAGTGAAGAGGTCTNTAATGAACAGTGNTAAATCTTCCGGG
                      ____________________________________________________________
consensus             TGCTTGCCGATCTAGAGGCGAGTGAAGAGGTCTCTAATGAACAGTGCTAAATCTTCCGGG
 
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JMSF043C12+           TGGAGGTAGAGGACCGGGAGGGGGGAGAGAGAGAGGACAATAGCCGTGGACTCCCCATTT
rJMSF043F13+          TGGAGGTAGAGGACCGGGAGGGGGGAGAGAGAGAGGACAATAGCCGTGGACTCCCCATTT
                      ____________________________________________________________
consensus             TGGAGGTAGAGGACCGGGAGGGGGGAGAGAGAGAGGACAATAGCCGTGGACTCCCCATTT
 
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JMSF043C12+           TACCCTTTTAGTTTGATCG                                         
rJMSF043F13+          TACCCTTTTAGTTTGATCGNCAAATTACNCTAAGGATCATTTCGGGTAAAAAGAACAATC
                      ____________________________________________________________
consensus             TACCCTTTTAGTTTGATCGNCAAATTACNCTAAGGATCATTTCGGGTAAAAAGAACAATC
 
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rJMSF043F13+          GGAGNTAAATTGAAGAATTTTGAAAATTAAAGNCCAAATTGGTGAAATTNTCATAGTCGA
                      ____________________________________________________________
consensus             GGAGNTAAATTGAAGAATTTTGAAAATTAAAGNCCAAATTGGTGAAATTNTCATAGTCGA
 
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rJMSF043F13+          GGGNCCAAATCGGTAATTAACTCATCCTTTTTGGTTTCCCTCCTGTTATAGCNCTAGCTT
                      ____________________________________________________________
consensus             GGGNCCAAATCGGTAATTAACTCATCCTTTTTGGTTTCCCTCCTGTTATAGCNCTAGCTT
 
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rJMSF043F13+          TNTGGCATGTCATCATCACAATTCACAAAAAGCACAAACCCTCTGGTCAAAAGGCAGATG
                      ____________________________________________________________
consensus             TNTGGCATGTCATCATCACAATTCACAAAAAGCACAAACCCTCTGGTCAAAAGGCAGATG
 
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rJMSF043F13+          AATAACAGATTTGTGAGAGGCCTCAACCCTCCCCTTCCCCACATTACATAATACATATTC
                      ____________________________________________________________
consensus             AATAACAGATTTGTGAGAGGCCTCAACCCTCCCCTTCCCCACATTACATAATACATATTC
 
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rJMSF043F13+          AGAAAAAAGGNGNGACAACNCAGAGCTGAAGAAGCTTCTCATGTCATAGNTACACAAAAG
                      ____________________________________________________________
consensus             AGAAAAAAGGNGNGACAACNCAGAGCTGAAGAAGCTTCTCATGTCATAGNTACACAAAAG
 
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rJMSF043F13+          GCATCACTATTTTCTTGGTAAGCAATTCTCTCCTAACCTCTCTCATTCTTTACTGTTCTG
                      ____________________________________________________________
consensus             GCATCACTATTTTCTTGGTAAGCAATTCTCTCCTAACCTCTCTCATTCTTTACTGTTCTG
 
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rJMSF043F13+          NGCATGCATTCTNTTCCNTTCCAATTTTTTTTTTGATTCTCAAGTTTTGCAGTCTCAGAA
                      ____________________________________________________________
consensus             NGCATGCATTCTNTTCCNTTCCAATTTTTTTTTTGATTCTCAAGTTTTGCAGTCTCAGAA
 
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rJMSF043F13+          CATTAATGGAGTAGAAAGAAGAAAGAAGAAATGTCTGCACACAAAAACAATATTATATAT
                      ____________________________________________________________
consensus             CATTAATGGAGTAGAAAGAAGAAAGAAGAAATGTCTGCACACAAAAACAATATTATATAT