Contig 002961:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034O19Sequence598007965 (2)ref|XP_007051762.1|1e-12ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative isoform 3 [Theobro702002961 (2)ref|XP_009783361.1|3e-47PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana sylv
JMSF043D18Sequence739007965 (2)ref|XP_009762716.1|3e-34PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana sylv771002961 (2)ref|XP_009617230.1|2e-57PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana tome

Alignment

This contig is upended


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rJMSF034O19+                                                                     T
rJMSF043D18+                   GGAAGNCAAGATACATGTGGTTGCCCAATCCCGGGTTCCTATACGTGTGTT
                      ____________________________________________________________
consensus                      GGAAGNCAAGATACATGTGGTTGCCCAATCCCGGGTTCCTATACGTGTGTT
 
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rJMSF034O19+          AAATTTCACATTACCGAGAAAAGGTCGAAGGTTGAAAATGAGTTGGGCTCGGCTTTTAAA
rJMSF043D18+          AAATTTCACATTACCGAGAAAAGGTCGAAGGTTGAAAATGAGTTGGGCTCGGCTTTTAAA
                      ____________________________________________________________
consensus             AAATTTCACATTACCGAGAAAAGGTCGAAGGTTGAAAATGAGTTGGGCTCGGCTTTTAAA
 
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rJMSF034O19+          CTATGGAAACTCGATTCTGCTGGTGATGAAGTTGCAAACTCTTGGACCAAAGAAGAAGAA
rJMSF043D18+          CTATGGAAACTCGATTCTGCTGGTGATGAAGTTGCAAACTCTTGGACCAAAGAAGAAGAA
                      ____________________________________________________________
consensus             CTATGGAAACTCGATTCTGCTGGTGATGAAGTTGCAAACTCTTGGACCAAAGAAGAAGAA
 
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rJMSF034O19+          AAGAAATTTGAGGATATAGTAAAATCTCAATCACCTAGCAAGTGTTTCTGGGATGAAATT
rJMSF043D18+          AAGAAATTTGAGGATATAGTAAAATCTCAATCACCTAGCAAGTGTTTCTGGGATGAAATT
                      ____________________________________________________________
consensus             AAGAAATTTGAGGATATAGTAAAATCTCAATCACCTAGCAAGTGTTTCTGGGATGAAATT
 
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rJMSF034O19+          TTTAAGGAGTTCCCTACCAAGAGTAGGGACTCTTTGGTAAGCTATCACTTCAATGTTTTC
rJMSF043D18+          TTTAAGGAGTTCCCTACCAAGAGTAGGGACTCTTTGGTAAGCTATCACTTCAATGTTTTC
                      ____________________________________________________________
consensus             TTTAAGGAGTTCCCTACCAAGAGTAGGGACTCTTTGGTAAGCTATCACTTCAATGTTTTC
 
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rJMSF034O19+          CTTCTCAGACGCCGAGGTCACCAGAATAGGTTCACTCCTACAGAAATTGACAGTGATGAT
rJMSF043D18+          CTTCTCAGACGCCGAGGTCACCAGAATAGGTTCACTCCTACAGAAATTGACAGTGATGAT
                      ____________________________________________________________
consensus             CTTCTCAGACGCCGAGGTCACCAGAATAGGTTCACTCCTACAGAAATTGACAGTGATGAT
 
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rJMSF034O19+          GATGAATCACGGTATGGTCCCAGGACAAAATCATTTGGACGGGAAGTTGTTAAGTCTTCA
rJMSF043D18+          GATGAATCACGGTATGGTCCCAGGACAAAATCATTTGGACGGGAAGTTGTTAAGTCTTCA
                      ____________________________________________________________
consensus             GATGAATCACGGTATGGTCCCAGGACAAAATCATTTGGACGGGAAGTTGTTAAGTCTTCA
 
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rJMSF034O19+          AACTCAATATTTTGTTCCCCAGCGAAAGCACCTCAGGATACCTGATAGGCCTTAGAGTTT
rJMSF043D18+          AACTCAATATTTTGTTCCCCAGCGAAAGCACCTCAGGATACCTGATAGGCCTTAGAGTTT
                      ____________________________________________________________
consensus             AACTCAATATTTTGTTCCCCAGCGAAAGCACCTCAGGATACCTGATAGGCCTTAGAGTTT
 
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rJMSF034O19+          CATTATCTTCAATGGAATGGTTCACAACTGTAAATTGCAGAAGTCTCTCAGTGGTCTTAC
rJMSF043D18+          CATTATCTTCAATGGAATGGTTCACAACTGTAAATTGCAGAAGTCTCTCAGTGGTCTTAC
                      ____________________________________________________________
consensus             CATTATCTTCAATGGAATGGTTCACAACTGTAAATTGCAGAAGTCTCTCAGTGGTCTTAC
 
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rJMSF034O19+          TGTTCAGCAAGTTTTTGTGGGAATTGGTTTGGGGTTGCTGATGCAAATATACAAGGCCAT
rJMSF043D18+          TGTTCAGCAAGTTTTTGTGGGAATTGGTTTGGGGTTGCTGATGCAAATATACAAGGCCAT
                      ____________________________________________________________
consensus             TGTTCAGCAAGTTTTTGTGGGAATTGGTTTGGGGTTGCTGATGCAAATATACAAGGCCAT
 
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rJMSF034O19+          GACAAAATTGTATAATTGGGCATTAAAACGTGCCCTTTTGCTGGATAGCTTTCCTTTTAA
rJMSF043D18+          GACAAAATTGTATAATTGGGCATTAAAACGTGCCCTTTTGCTGGATAGCTTTCCTTTTAA
                      ____________________________________________________________
consensus             GACAAAATTGTATAATTGGGCATTAAAACGTGCCCTTTTGCTGGATAGCTTTCCTTTTAA
 
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rJMSF034O19+          TACTCATCCTGATAACAGGAGGAAATTTTTGCTTTATTTTCATGGCTCCCATAGTTTACA
rJMSF043D18+          TACTCATCCTGATAACAGGAGGAAATTTTTGCTTTATTTTCATGGCTCCCATAGTTTACA
                      ____________________________________________________________
consensus             TACTCATCCTGATAACAGGAGGAAATTTTTGCTTTATTTTCATGGCTCCCATAGTTTACA
 
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rJMSF034O19+          GTTTTACAACAGTGTCAGCTCATTAGTGAGTTACTGTACAT                   
rJMSF043D18+          GTTTTACAACAGTGTCAGCTCATTAGTGAGTTACTGTACATTGTTTTTGTCATTTGAAAC
                      ____________________________________________________________
consensus             GTTTTACAACAGTGTCAGCTCATTAGTGAGTTACTGTACATTGTTTTTGTCATTTGAAAC