Contig 002959:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042M19Sequence282009318 (8)ref|XP_007034240.1|2e-35RNA recognition motif-containing protein isoform 1 [Theobroma cacao] ref|XP_007669002959 (2)
JMSF043M19Sequence280009318 (8)gb|KJB28110.1|3e-33hypothetical protein B456_005G028400 [Gossypium raimondii]507002959 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042M19+ TGGAGGAAA
                      ____________________________________________________________
consensus TGGAGGAAA
 
. : . : . : . : . : . :
rJMSF042M19+ AGATGAACTCACAAGGCATGNCAATGAGAAGCCTGGAAAGTTAGATGACATCTGGAAGAA
                      ____________________________________________________________
consensus AGATGAACTCACAAGGCATGNCAATGAGAAGCCTGGAAAGTTAGATGACATCTGGAAGAA
 
. : . : . : . : . : . :
rJMSF043M19+ TCTAANGATGATAATCTTCATCATGGGGATCAT
rJMSF042M19+ AATCTGCATAATTCTGATTCAATGAACTCTAATGATGATAATCTTCATCATGGGGATCAT
                      ____________________________________________________________
consensus AATCTGCATAATTCTGATTCAATGAACTCTAATGATGATAATCTTCATCATGGGGATCAT
 
. : . : . : . : . : . :
rJMSF043M19+ AAAAAAAGTGTGAAACCAGAGGGCAGTGACAGTGAAGGATCTGAGTTCACCAATAGGGAA
rJMSF042M19+ AAAAAAAGTGTGAAACCAGAGGGCAGTGACAGTGAAGGATCTGAGTTCACCAATAGGGAA
                      ____________________________________________________________
consensus AAAAAAAGTGTGAAACCAGAGGGCAGTGACAGTGAAGGATCTGAGTTCACCAATAGGGAA
 
. : . : . : . : . : . :
rJMSF043M19+ CAATGTCATTCTTAAATACTGTAATTTGAATATAGAGATACCGGTGATTAGAGGAGTTTN
rJMSF042M19+ CAATGTCATTCTTAAATACTGTAATTTGAATATAGAGATACCGGTGATTAGAGGAGTTTC
                      ____________________________________________________________
consensus CAATGTCATTCTTAAATACTGTAATTTGAATATAGAGATACCGGTGATTAGAGGAGTTTC
 
. : . : . : . : . : . :
rJMSF043M19+ TTCCATTGGAGTATTGGACNNTGATTCAAAGCTTTCTGATTCCACTTGTGTGAGGGCCAA
rJMSF042M19+ TTCCATTGGAGTATTGGACACTGATTCAAAGCTTTCTGATTCCATTTGTGTGAGGGCCAA
                      ____________________________________________________________
consensus TTCCATTGGAGTATTGGACACTGATTCAAAGCTTTCTGATTCCATTTGTGTGAGGGCCAA
 
. : . : . : . : . : . :
rJMSF043M19+ TTTTGTGAACAATGTGACAGCAGATTGTGTTGAAGCTTAGGTTTTGAGGAACCAGATCCT
rJMSF042M19+ TTTTGTGAACAATGTGACAGCAGATTGTGTTGAAGCTTAGGTTTTGAGGAACCAGATCCT
                      ____________________________________________________________
consensus TTTTGTGAACAATGTGACAGCAGATTGTGTTGAAGCTTAGGTTTTGAGGAACCAGATCCT
 
. : . : . : . : . : . :
rJMSF043M19+ AATTTGTACAAGAGAGGGCTCCCATAGGAGATGTAGTGGTCACTTNTGANTACTCGCTGT
rJMSF042M19+ AATTTGTACAAGAGAGGGCTCCCATAGGAGATGTAGTGGTCACTTTTGATTACTCGCTGT
                      ____________________________________________________________
consensus AATTTGTACAAGAGAGGGCTCCCATAGGAGATGTAGTGGTCACTTTTGATTACTCGCTGT
 
. : . : . : . : . : . :
rJMSF043M19+ TCGTGNGNCACTTTCGCTGTGTTTGCTTTGNATTGCAGGTGGTGGAGGCAATTGGAACCN
rJMSF042M19+ TCGTGTGACACTTTCGCTGTGTTTGCTTTGTATTGCAGGTGGTGGAGGCAATTGGAACCT
                      ____________________________________________________________
consensus TCGTGTGACACTTTCGCTGTGTTTGCTTTGTATTGCAGGTGGTGGAGGCAATTGGAACCT
 
. : . : . : . : . : . :
rJMSF043M19+ GATGAAGCAATGATTGNNGGTATTATATTCAACAATTGTCTTTGAACCCTTGTGGATCAA
rJMSF042M19+ GATGAAGCAATGATTGTTGGTATTATATTCAACAATTGTCTTTGAACCCTTGTGGATCAA
                      ____________________________________________________________
consensus GATGAAGCAATGATTGTTGGTATTATATTCAACAATTGTCTTTGAACCCTTGTGGATCAA
 
. : . : . : . : . : . :
rJMSF043M19+ CTGTNCAATGTTTTTTTA
rJMSF042M19+ CTGTGCAATGTTTTTTTAGCAAACTACTTTATGAGTTTGCTGTATGGTGGACTATTACCT
                      ____________________________________________________________
consensus CTGTGCAATGTTTTTTTAGCAAACTACTTTATGAGTTTGCTGTATGGTGGACTATTACCT
 
. : . : . : . : . : . :
rJMSF042M19+ CTGTCAAGAGGTAGTGAATTTCTTAATTGTATGCCCATGTAAGGATTCTGACTGCTATCT
                      ____________________________________________________________
consensus CTGTCAAGAGGTAGTGAATTTCTTAATTGTATGCCCATGTAAGGATTCTGACTGCTATCT