Contig 002959:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042M19Sequence282009318 (8)ref|XP_007034240.1|2e-35RNA recognition motif-containing protein isoform 1 [Theobroma cacao] ref|XP_007669002959 (2)
JMSF043M19Sequence280009318 (8)gb|KJB28110.1|3e-33hypothetical protein B456_005G028400 [Gossypium raimondii]507002959 (2)

Alignment

This contig is upended


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rJMSF042M19+                                                             TGGAGGAAA
                      ____________________________________________________________
consensus                                                                TGGAGGAAA
 
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rJMSF042M19+          AGATGAACTCACAAGGCATGNCAATGAGAAGCCTGGAAAGTTAGATGACATCTGGAAGAA
                      ____________________________________________________________
consensus             AGATGAACTCACAAGGCATGNCAATGAGAAGCCTGGAAAGTTAGATGACATCTGGAAGAA
 
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rJMSF043M19+                                     TCTAANGATGATAATCTTCATCATGGGGATCAT
rJMSF042M19+          AATCTGCATAATTCTGATTCAATGAACTCTAATGATGATAATCTTCATCATGGGGATCAT
                      ____________________________________________________________
consensus             AATCTGCATAATTCTGATTCAATGAACTCTAATGATGATAATCTTCATCATGGGGATCAT
 
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rJMSF043M19+          AAAAAAAGTGTGAAACCAGAGGGCAGTGACAGTGAAGGATCTGAGTTCACCAATAGGGAA
rJMSF042M19+          AAAAAAAGTGTGAAACCAGAGGGCAGTGACAGTGAAGGATCTGAGTTCACCAATAGGGAA
                      ____________________________________________________________
consensus             AAAAAAAGTGTGAAACCAGAGGGCAGTGACAGTGAAGGATCTGAGTTCACCAATAGGGAA
 
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rJMSF043M19+          CAATGTCATTCTTAAATACTGTAATTTGAATATAGAGATACCGGTGATTAGAGGAGTTTN
rJMSF042M19+          CAATGTCATTCTTAAATACTGTAATTTGAATATAGAGATACCGGTGATTAGAGGAGTTTC
                      ____________________________________________________________
consensus             CAATGTCATTCTTAAATACTGTAATTTGAATATAGAGATACCGGTGATTAGAGGAGTTTC
 
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rJMSF043M19+          TTCCATTGGAGTATTGGACNNTGATTCAAAGCTTTCTGATTCCACTTGTGTGAGGGCCAA
rJMSF042M19+          TTCCATTGGAGTATTGGACACTGATTCAAAGCTTTCTGATTCCATTTGTGTGAGGGCCAA
                      ____________________________________________________________
consensus             TTCCATTGGAGTATTGGACACTGATTCAAAGCTTTCTGATTCCATTTGTGTGAGGGCCAA
 
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rJMSF043M19+          TTTTGTGAACAATGTGACAGCAGATTGTGTTGAAGCTTAGGTTTTGAGGAACCAGATCCT
rJMSF042M19+          TTTTGTGAACAATGTGACAGCAGATTGTGTTGAAGCTTAGGTTTTGAGGAACCAGATCCT
                      ____________________________________________________________
consensus             TTTTGTGAACAATGTGACAGCAGATTGTGTTGAAGCTTAGGTTTTGAGGAACCAGATCCT
 
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rJMSF043M19+          AATTTGTACAAGAGAGGGCTCCCATAGGAGATGTAGTGGTCACTTNTGANTACTCGCTGT
rJMSF042M19+          AATTTGTACAAGAGAGGGCTCCCATAGGAGATGTAGTGGTCACTTTTGATTACTCGCTGT
                      ____________________________________________________________
consensus             AATTTGTACAAGAGAGGGCTCCCATAGGAGATGTAGTGGTCACTTTTGATTACTCGCTGT
 
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rJMSF043M19+          TCGTGNGNCACTTTCGCTGTGTTTGCTTTGNATTGCAGGTGGTGGAGGCAATTGGAACCN
rJMSF042M19+          TCGTGTGACACTTTCGCTGTGTTTGCTTTGTATTGCAGGTGGTGGAGGCAATTGGAACCT
                      ____________________________________________________________
consensus             TCGTGTGACACTTTCGCTGTGTTTGCTTTGTATTGCAGGTGGTGGAGGCAATTGGAACCT
 
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rJMSF043M19+          GATGAAGCAATGATTGNNGGTATTATATTCAACAATTGTCTTTGAACCCTTGTGGATCAA
rJMSF042M19+          GATGAAGCAATGATTGTTGGTATTATATTCAACAATTGTCTTTGAACCCTTGTGGATCAA
                      ____________________________________________________________
consensus             GATGAAGCAATGATTGTTGGTATTATATTCAACAATTGTCTTTGAACCCTTGTGGATCAA
 
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rJMSF043M19+          CTGTNCAATGTTTTTTTA                                          
rJMSF042M19+          CTGTGCAATGTTTTTTTAGCAAACTACTTTATGAGTTTGCTGTATGGTGGACTATTACCT
                      ____________________________________________________________
consensus             CTGTGCAATGTTTTTTTAGCAAACTACTTTATGAGTTTGCTGTATGGTGGACTATTACCT
 
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rJMSF042M19+          CTGTCAAGAGGTAGTGAATTTCTTAATTGTATGCCCATGTAAGGATTCTGACTGCTATCT
                      ____________________________________________________________
consensus             CTGTCAAGAGGTAGTGAATTTCTTAATTGTATGCCCATGTAAGGATTCTGACTGCTATCT