| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF015N17 | Sequence | 499 | 003831 (5) | ref|XP_006359586.1| | 4e-57 | PREDICTED: cationic amino acid transporter 9, chloroplastic-like [Solanum tuber | 772 | 002956 (5) | ref|XP_011093273.1| | 2e-93 | PREDICTED: cationic amino acid transporter 9, chloroplastic-like [Sesamum indic |
| JMSF033L06 | Sequence | 679 | 003831 (5) | ref|XP_011089716.1| | 7e-88 | PREDICTED: cationic amino acid transporter 9, chloroplastic-like [Sesamum indic | 699 | 002956 (5) | ref|XP_011093273.1| | 4e-87 | PREDICTED: cationic amino acid transporter 9, chloroplastic-like [Sesamum indic |
| JMSF041K23 | Sequence | 821 | 003831 (5) | ref|XP_011089716.1| | 1e-106 | PREDICTED: cationic amino acid transporter 9, chloroplastic-like [Sesamum indic | 607 | 002956 (5) | ref|XP_009591077.1| | 1e-60 | PREDICTED: cationic amino acid transporter 9, chloroplastic [Nicotiana tomentos |
| JMSF043M12 | Sequence | 795 | 003831 (5) | ref|XP_011089716.1| | 6e-93 | PREDICTED: cationic amino acid transporter 9, chloroplastic-like [Sesamum indic | 756 | 002956 (5) | ref|XP_009591077.1| | 8e-60 | PREDICTED: cationic amino acid transporter 9, chloroplastic [Nicotiana tomentos |
| JMSF044M12 | Sequence | 176 | 000573 (73) | pdb|2VB2|X | 6e-23 | Chain X, Crystal Structure Of Cu(I)cusf pdb|2VB3|X Chain X, Crystal Structure Of | 213 | 002956 (5) | ref|XP_010275402.1| | 1e-12 | PREDICTED: cationic amino acid transporter 9, chloroplastic [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF043M12+ TTATTATGATTTATGAGTTATGAGACTAATCTATA
____________________________________________________________
consensus TTATTATGATTTATGAGTTATGAGACTAATCTATA
. : . : . : . : . : . :
rJMSF043M12+ AGCCGATAAAATTCAAGACGAGTCATTTTATGACAAATGATCTTGAATAATAATGCATTG
____________________________________________________________
consensus AGCCGATAAAATTCAAGACGAGTCATTTTATGACAAATGATCTTGAATAATAATGCATTG
. : . : . : . : . : . :
rJMSF043M12+ ACGATGGATTTCTTTCCTTGAAGGGTCATAATTGCTTTCTTGAATAATATATATATAAGC
____________________________________________________________
consensus ACGATGGATTTCTTTCCTTGAAGGGTCATAATTGCTTTCTTGAATAATATATATATAAGC
. : . : . : . : . : . :
rJMSF043M12+ ATGCATTGTATAAGTTTTAAATTCTCGTGCAACTCACATTGCACTGATTTGATCCAGACA
rJMSF033L06+ GACA
rJMSF015N17+ GACA
rJMSF044M12+ GACA
rJMSF041K23+ GACA
____________________________________________________________
consensus ATGCATTGTATAAGTTTTAAATTCTCGTGCAACTCACATTGCACTGATTTGATCCAGACA
. : . : . : . : . : . :
rJMSF043M12+ GGATATTCTGTTGTTGCAGCTTGTGTGGTATCCCTCCGTTTAAAAGATAAGCCTGTGAAT
rJMSF033L06+ GGATATTCTGTTGTTGCAGCTTGTGTGGTATCCCTCCGTTTAAAAGATAAGCCTGTGAAT
rJMSF015N17+ GGATATTCTGTTGTTGCAGCTTGTGTGGTATCCCTCCGTTTAAAAGATAAGCCTGTGAAT
rJMSF044M12+ GGATATTCTGTTGTTGCAGCTTGTGTGGTATCCCTNCGTTTAAAAGATAAGCCTGTGAAT
rJMSF041K23+ GGATATTCTGTTGTTGCAGCTTGTGTGGTATCCCTCCGTTTAAAAGATAAGCCTGTGAAT
____________________________________________________________
consensus GGATATTCTGTTGTTGCAGCTTGTGTGGTATCCCTCCGTTTAAAAGATAAGCCTGTGAAT
. : . : . : . : . : . :
rJMSF043M12+ CAGGTCTCCGCAGGGTGTGTTTCAAACAGGAATGAAGGCATCATTTGCCTCACCTTAGTT
rJMSF033L06+ CAGGTCTCCGCAGGGTGTGTTTCAAACAGGAATGAAGGCATCATTTGCCTCACCTTAGTT
rJMSF015N17+ CAGGTCTCCGCAGGGTGTGTTTCAAACAGGAATGAAGGCATCATTTGCCTCACCTTAGTT
rJMSF044M12+ CAGGTCTCCGCAGGGTGTGTTTCAAACAGGAATGAAGGCATCATTTGCCTCACGTTAGTT
rJMSF041K23+ CAGGTCTCCGCAGGGTGTGTTTCAAACAGGAATGAAGGCATCATTTGCCTCACCTTAGTT
____________________________________________________________
consensus CAGGTCTCCGCAGGGTGTGTTTCAAACAGGAATGAAGGCATCATTTGCCTCACCTTAGTT
. : . : . : . : . : . :
rJMSF043M12+ GCCTTTTGTGGGTTTGCTGCTGGAGTCCTTTACCGTTTTGGTGCTTCATTTGCTTTTGTG
rJMSF033L06+ GCCTTTTGTGGGTTTGCTGCTGGAGTCCTTTACCGTTTTGGTGCTTCATTTGCTTTTGTG
rJMSF015N17+ GCCTTTTGTGGGTTTGCTGCTGGAGTCCTTTACCGTTTTGGTGCTTCATTTGCTTTTGTG
rJMSF044M12+ GCCTTTTGTGGGTTNGNTGCTGGAGTCCTTTNCCGTTTTGGTGCTTCATTTGCTNTTGTG
rJMSF041K23+ GCCTTTTGTGGGTTTGCTGCTGGAGTCCTTTACCGTTTTGGTGCTTCATTTGCTTTTGTG
____________________________________________________________
consensus GCCTTTTGTGGGTTTGCTGCTGGAGTCCTTTACCGTTTTGGTGCTTCATTTGCTTTTGTG
. : . : . : . : . : . :
rJMSF043M12+ ATTGTAGCTGCAGTTATTGCCATCATTGCTGCCGCGGCTCTTCATTTCCGGCAAGTTTAT
rJMSF033L06+ ATTGTAGCTGCAGTTATTGCCATCATTGCTGCCGCGGCTCTTCATTTCCGGCAAGTTTAT
rJMSF015N17+ ATTGTAGCTGCAGTTATTGCCATCATTGCTGCCGCGGCTCTTCATTTCCGGCAAGTTTAT
rJMSF044M12+ ATTGTAGNGGCAGTTATTGCCATCATTG
rJMSF041K23+ ATTGTAGCTGCAGTTATTGCCATCATTGCTGCCGCGGCTCTTCATTTCCGGCAAGTTTAT
____________________________________________________________
consensus ATTGTAGCTGCAGTTATTGCCATCATTGCTGCCGCGGCTCTTCATTTCCGGCAAGTTTAT
. : . : . : . : . : . :
rJMSF043M12+ ACTAATCCACCGGGATTTTCTTGCCCAGGAGTTCCAGTTGTACCTGCTGTTTGTATCTTC
rJMSF033L06+ ACTAATCCACCGGGATTTTCTTGCCCAGGAGTTCCAGTTGTACCTGCTGTTTGTATCTTC
rJMSF015N17+ ACTAATCCACCGGGATTTTCTTGCCCAGGAGTTCCAGTTGTACCTGCTGTTTGTATCTTC
rJMSF041K23+ ACTAATCCACCGGGATTTTCTTGCCCAGGAGTTCCAGTTGTACCTGCTGTTTGTATCTTC
____________________________________________________________
consensus ACTAATCCACCGGGATTTTCTTGCCCAGGAGTTCCAGTTGTACCTGCTGTTTGTATCTTC
. : . : . : . : . : . :
rJMSF043M12+ CTGAACATTTTTCTTTTTGCCCAGTTGCACTACGAGGCCTGGGTGAGATTCGTTGTTCTG
rJMSF033L06+ CTGAACATTTTTCTTTTTGCCCAGTTGCACTACGAGGCCTGGGTGAGATTCGTTGTTCTG
rJMSF015N17+ CTGAACATTTTTCTTTTTGCCCAGTTGCACTACGAGGCCTGGGTGAGATTCGTTGTTCTG
rJMSF041K23+ CTGAACATTTTTCTTTTTGCCCAGTTGCACTACGAGGCCTGGGTGAGATTCGTTGTTCTG
____________________________________________________________
consensus CTGAACATTTTTCTTTTTGCCCAGTTGCACTACGAGGCCTGGGTGAGATTCGTTGTTCTG
. : . : . : . : . : . :
rJMSF043M12+ TGCATCATTACAGTTGGTTGTTATGCACTTTACGGGCAGTATCATTCGAATCCTTTAGGT
rJMSF033L06+ TGCATCATTACAGTTGGTTGTTATGCACTTTACGGGCAGTATCATTCGAATCCTTTAGGT
rJMSF015N17+ TGCATCATTACAGTTGGTTGTTATGCACTTTACGGGCAGTATCATTCGAATCCTTTAGGT
rJMSF041K23+ TGCATCATTACAGTTGGTTGTTATGCACTTTACGGGCAGTATCATTCGAATCCTTTAGGT
____________________________________________________________
consensus TGCATCATTACAGTTGGTTGTTATGCACTTTACGGGCAGTATCATTCGAATCCTTTAGGT
. : . : . : . : . : . :
rJMSF043M12+ TCAAGCTCTTTGGTTACTTACCATAGGGCACCTTCAGATGAAGCTAATGCTTAAGGCTCT
rJMSF033L06+ TCAAGCTCTTTGGTTACTTACCATAGGGCACCTTCAGATGAAGCTAATGCTTAAGGCTCT
rJMSF015N17+ TCAAGCTCTTTGGTTACTTACCATAGGGCACCTTCAGATGAAGCTAATGCTTAAGGCTCT
rJMSF041K23+ TCAAGCTCTTTGGTTACTTACCATAGGGCACCTTCAGATGAAGCTAATGCTTAAGGCTCT
____________________________________________________________
consensus TCAAGCTCTTTGGTTACTTACCATAGGGCACCTTCAGATGAAGCTAATGCTTAAGGCTCT
. : . : . : . : . : . :
rJMSF043M12+ TATAGTGTCCTTCAATGCCATTGTAATCTCCTTTGAGGAGAGTCAA
rJMSF033L06+ TATAGTGTCCTTCAATGCCATTGTAATCTCCTTTGAGGAGAGTCAACTGTACTGTATGTT
rJMSF015N17+ TATAGTGTCCTTCAATGCCATTGTAATCTCCTTTGAGGAGAGTCAACTGTACTGTATGTT
rJMSF041K23+ TATAGTGTCCTTCAATGCCATTGTAATCTCCTTTGAGGAGAGTCAACTGTACTGTATGTT
____________________________________________________________
consensus TATAGTGTCCTTCAATGCCATTGTAATCTCCTTTGAGGAGAGTCAACTGTACTGTATGTT
. : . : . : . : . : . :
rJMSF033L06+ GTACAATAACTTCT
rJMSF015N17+ GTACAATAACTTCTTGGATTAAAATGCTGGATGTTTGGGTGTATACTAT
rJMSF041K23+ GTACAATAACTTCTTGGATTAAAATGCTGGATGTTTGGGTGTATACTATGTGTATTGCTG
____________________________________________________________
consensus GTACAATAACTTCTTGGATTAAAATGCTGGATGTTTGGGTGTATACTATGTGTATTGCTG