Contig 002952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007E03Sequence375002031 (7)ref|XP_006339444.1|5e-06PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Solanum tub748002952 (3)ref|XP_011090905.1|2e-91PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Sesam
JMSF010H02Sequence317002031 (7)713002952 (3)ref|XP_011090913.1|7e-84PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X2 [Sesam
JMSF040L04Sequence635002031 (7)ref|XP_006339444.1|1e-65PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Solanum tub909002952 (3)ref|XP_011090905.1|2e-122PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Sesam

Alignment

This contig is upended


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rJMSF040L04+                                                             ACTCTGAAG
                      ____________________________________________________________
consensus                                                                ACTCTGAAG
 
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rJMSF040L04+          ATGAAACTATACGCAGAATAGCTGCTGGTGCAATTGCAAATCTTGCAATGAATGAATCAA
                      ____________________________________________________________
consensus             ATGAAACTATACGCAGAATAGCTGCTGGTGCAATTGCAAATCTTGCAATGAATGAATCAA
 
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rJMSF040L04+          ACCAGGAGCTTATTATGGCTCATAGTGGTATTAGTCTATTGGCAATGACAGCAGCTGAAG
                      ____________________________________________________________
consensus             ACCAGGAGCTTATTATGGCTCATAGTGGTATTAGTCTATTGGCAATGACAGCAGCTGAAG
 
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rJMSF007E03+                           CTTCGTATGGTTGCTGGAGCAATTGCAAATCTATGTGGCAATG
rJMSF010H02+                                                          TATGTGGCAATG
rJMSF040L04+          CTGAGGATCCTCAGACTCTTCGTATGGTTGCTGGAGCAATTGCAAATCTATGTGGCAATG
                      ____________________________________________________________
consensus             CTGAGGATCCTCAGACTCTTCGTATGGTTGCTGGAGCAATTGCAAATCTATGTGGCAATG
 
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rJMSF007E03+          ATAAACTGCAGACAAGGCTAAGGTCTGAAGGTGGTATCAGGGCTTTGTTAGGAATGGTGA
rJMSF010H02+          ATAAACTGCAGACAAGGCTAAGGTCTGAAGGTGGTATCAGGGCTTTGTTAGGAATGGTGA
rJMSF040L04+          ATAAACTGCAGACAAGGCTAAGGTCTGAAGGTGGTATCAGGGCTTTGTTAGGAATGGTGA
                      ____________________________________________________________
consensus             ATAAACTGCAGACAAGGCTAAGGTCTGAAGGTGGTATCAGGGCTTTGTTAGGAATGGTGA
 
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rJMSF007E03+          GGTGTAGACATCCAGATGTTCTTTCTCAAGTCGCACGTGGAATTGCCAATTTCGCCAAGT
rJMSF010H02+          GGTGTAGACATCCAGATGTTCTTTCTCAAGTCGCACGTGGAATTGCCAATTTCGCCAAGT
rJMSF040L04+          GGTGTAGACATCCAGATGTTCTTTCTCAAGTCGCACGTGGAATTGCCAATTTCGCCAAGT
                      ____________________________________________________________
consensus             GGTGTAGACATCCAGATGTTCTTTCTCAAGTCGCACGTGGAATTGCCAATTTCGCCAAGT
 
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rJMSF007E03+          GTGAGTCCAGAGCTTCTGCCCAAGGCATAAAACTTGGACGATCCCTTCTAATAGAAGATG
rJMSF010H02+          GTGAGTCCAGAGCTTCTGCCCAAGGCATAAAACTTGGACGATCCCTTCTAATAGAAGATG
rJMSF040L04+          GTGAGTCCAGAGCTTCTGCCCAAGGCATAAAACTTGGACGATCCCTTCTAATAGAAGATG
                      ____________________________________________________________
consensus             GTGAGTCCAGAGCTTCTGCCCAAGGCATAAAACTTGGACGATCCCTTCTAATAGAAGATG
 
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rJMSF007E03+          GAGCACTACCATGGATCGTACAAAATGCCAACAACGAAGCCTCACTTATTAGGCGACATG
rJMSF010H02+          GAGCACTACCATGGATCGTACAAAATGCCAACAACGAAGCCTCACTTATTAGGCGACATG
rJMSF040L04+          GAGCACTACCATGGATCGTACAAAATGCCAACAACGAAGCCTCACTTATTAGGCGACATG
                      ____________________________________________________________
consensus             GAGCACTACCATGGATCGTACAAAATGCCAACAACGAAGCCTCACTTATTAGGCGACATG
 
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rJMSF007E03+          TGGAGCTTGCACTTTGCCACCTCGCACAACATGAAGTAAACGCAAAAGACATGATTAGCG
rJMSF010H02+          TGGAGCTTGCACTTTGCCACCTCGCACAACATGAAGTAAACGCAAAAGACATGATTAGCG
rJMSF040L04+          TGGAGCTTGCACTTTGCCACCTCGCACAACATGAAGTAAACGCAAAAGACATGATTAGCG
                      ____________________________________________________________
consensus             TGGAGCTTGCACTTTGCCACCTCGCACAACATGAAGTAAACGCAAAAGACATGATTAGCG
 
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rJMSF007E03+          GGGGAGCCCTTTGGGAGCTATATCGTATCTCACGTGACTGCACTCGCGAGGACATAAAGG
rJMSF010H02+          GGGGAGCCCTTTGGGAGCTATATCGTATCTCACGTGACTGCACTCGCGAGGACATAAAGG
rJMSF040L04+          GGGGAGCCCTTTGGGAGCTATATCGTATCTCACGTGACTGCACTCGCGAGGACATAAAGG
                      ____________________________________________________________
consensus             GGGGAGCCCTTTGGGAGCTATATCGTATCTCACGTGACTGCACTCGCGAGGACATAAAGG
 
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rJMSF007E03+          CTCTTGCACGGCAGACTTTGGCCTCAAGTCCAACCTTCCTATCTGAAATGCGGCGCTTGC
rJMSF010H02+          CTCTTGCACGGCAGACTTTGGCCTCAAGTCCAACCTTCCTATCTGAAATGCGGCGCTTGC
rJMSF040L04+          CTCTTGCACGGCAGACTTTGGCCTCAAGTCCAACCTTCCTATCTGAAATGCGGCGCTTGC
                      ____________________________________________________________
consensus             CTCTTGCACGGCAGACTTTGGCCTCAAGTCCAACCTTCCTATCTGAAATGCGGCGCTTGC
 
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rJMSF007E03+          ATATAGATGTCTAGTCTATAGATAGATATAATATAGATATAGAGTGATGGTGGTTACGCA
rJMSF010H02+          ATATAGATGTCTAGTCTATAGATAGATATAATATAGATATAGAGTGATGGTGGTTACGCA
rJMSF040L04+          ATATAGATGTCTAGTCTATAGATAGATATAATATAGATATAGAGTGATGGTGGTTACGCA
                      ____________________________________________________________
consensus             ATATAGATGTCTAGTCTATAGATAGATATAATATAGATATAGAGTGATGGTGGTTACGCA
 
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rJMSF007E03+          GGTGTTACCATTCATCTCAAGCCAACACTACATAAGCCTTTTTGAAGCCATCCAAGCCCG
rJMSF010H02+          GGTGTTACCATTCATCTCAAGCCAACACTACATAAGCCTTTTTGAAGCCATCCAAGCCCG
rJMSF040L04+          GGTGTTACCATTCATCTCAAGCCAACACTACATAAGCCTTTTTGAAGCCATCCAAGCCCG
                      ____________________________________________________________
consensus             GGTGTTACCATTCATCTCAAGCCAACACTACATAAGCCTTTTTGAAGCCATCCAAGCCCG
 
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rJMSF007E03+          GAGTTTGGTTGAAGAACGTACAAGGAGGCACAACGAGTTTATGATTGGCGCTGGTGAGAT
rJMSF010H02+          GAGTTTGGTTGAAGAACGTACAAGGAGGCACAACGAGTTTATGATTGGCGCTGGTGAGAT
rJMSF040L04+          GAGTTTGGTTGAAGAACGTACAAGGAGGCACAACGAGTTTATGATTGGCGCTGGTGAGAT
                      ____________________________________________________________
consensus             GAGTTTGGTTGAAGAACGTACAAGGAGGCACAACGAGTTTATGATTGGCGCTGGTGAGAT
 
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rJMSF007E03+          TTGATTAGATAGGTGTGTGTGTGTGTTGGCTTTATAACTCGGCATATTTGCTTGTTTCTT
rJMSF010H02+          TTGATTAGATAGGTGTGTGTGTGTGTTGGCTTTATAACTCGGCATATTTGCTTGTTTCTT
rJMSF040L04+          TTGATTAGATAGGTGTGTGTGTGTGTTGGCTTTATAACTCGGCATATTTGCTTGTTTCTT
                      ____________________________________________________________
consensus             TTGATTAGATAGGTGTGTGTGTGTGTTGGCTTTATAACTCGGCATATTTGCTTGTTTCTT
 
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rJMSF007E03+          TATATTCATTCAATCTTTGTTGCTGCC                                 
rJMSF010H02+          TATATTCATTCAATCTTTGTTGCTGCC                                 
rJMSF040L04+          TATATTCATTCAATCTTTGTTGCTGCCAGTTATCATATTTTGANCAGCGTATTGGAATCT
                      ____________________________________________________________
consensus             TATATTCATTCAATCTTTGTTGCTGCCAGTTATCATATTTTGANCAGCGTATTGGAATCT