Contig 002947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039O13Sequence606004835 (186)sp|P04715.1|RBS2_PETHY1e-92RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast602002947 (2)ref|XP_006843115.1|6e-08hypothetical protein AMTR_s00140p00082700 [Amborella trichopoda] gb|ERN04790.1|
JMSF048G23Sequence678014000 (2)gb|AFN42875.1|6e-22glutamine synthetase [Camellia sinensis]619002947 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF048G23+ GTAGAAAAAAGTACTAAATCATATTGAATTGCCCTCTCGCACA
                      ____________________________________________________________
consensus GTAGAAAAAAGTACTAAATCATATTGAATTGCCCTCTCGCACA
 
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rJMSF048G23+ AGCAATTTTCTACTGTTACTTGTTTGGTGCTTTGAATCAAAACGATAGTGTATTGACGTA
                      ____________________________________________________________
consensus AGCAATTTTCTACTGTTACTTGTTTGGTGCTTTGAATCAAAACGATAGTGTATTGACGTA
 
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rJMSF048G23+ TTCTAACNTTGTACTACNGTTTGTAATATCAGCTGTTGTTAATTGTTTTGTGCGNGGNTG
                      ____________________________________________________________
consensus TTCTAACNTTGTACTACNGTTTGTAATATCAGCTGTTGTTAATTGTTTTGTGCGNGGNTG
 
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rJMSF048G23+ AATTAAAACTGTGTGATGGAAGGAACCCTAAATGNCAACTAAGCCGGAAATAAGGNGAAC
                      ____________________________________________________________
consensus AATTAAAACTGTGTGATGGAAGGAACCCTAAATGNCAACTAAGCCGGAAATAAGGNGAAC
 
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rJMSF048G23+ NACNATAAGCNGAAGNTTNAGNGNGCNATTGCNGNTTNTACCTAAGTGCGATTTGAGTAC
                      ____________________________________________________________
consensus NACNATAAGCNGAAGNTTNAGNGNGCNATTGCNGNTTNTACCTAAGTGCGATTTGAGTAC
 
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rJMSF048G23+ NGATNTTCCTAAATGGGTAATTNTTCAGCNCNTGCATTTGAATGTTCCTAATAATTCCAA
                      ____________________________________________________________
consensus NGATNTTCCTAAATGGGTAATTNTTCAGCNCNTGCATTTGAATGTTCCTAATAATTCCAA
 
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rJMSF048G23+ GTTGAGGTTTTCCGCCTAAATACNTGNTAAGTGCTATTTACTCAGAGATAGGATCCTAAA
                      ____________________________________________________________
consensus GTTGAGGTTTTCCGCCTAAATACNTGNTAAGTGCTATTTACTCAGAGATAGGATCCTAAA
 
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rJMSF048G23+ GATTAACGTTGATGCNCNTGCNGNGNCTGGATAAAAAAAAAAGATAAGTTGAAGGGAATT
rJMSF039O13+ GGGAATT
                      ____________________________________________________________
consensus GATTAACGTTGATGCNCNTGCNGNGNCTGGATAAAAAAAAAAGATAAGTTGAAGGGAATT
 
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rJMSF048G23+ TTACATGGCACTGGGAGCGTCCCCCTGCCACAAAGTCAAGGCATTCTCCCCTTCCTCCTG
rJMSF039O13+ TTACNTGGCNCTGGGNGNGTCCCCCTGCCNCAAAGTCAAGGCATTNTCCCCTTCCTCCTG
                      ____________________________________________________________
consensus TTACATGGCACTGGGAGCGTCCCCCTGCCACAAAGTCAAGGCATTCTCCCCTTCCTCCTG
 
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rJMSF048G23+ AACCAGCTGGTTTCTATAACAATGCCTCTAT
rJMSF039O13+ AACCAGTTNGTTTNTATAACAANGCCTNTATAANGGCTCTANTGATATTCCNCTTGATAG
                      ____________________________________________________________
consensus AACCAGTTGGTTTCTATAACAATGCCTCTATAANGGCTCTANTGATATTCCNCTTGATAG
 
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rJMSF039O13+ CNCNCTGCGGTTCGNGNAACCNTTCATAACTGATGAATGCATACAACCATGTTCATCATT
                      ____________________________________________________________
consensus CNCNCTGCGGTTCGNGNAACCNTTCATAACTGATGAATGCATACAACCATGTTCATCATT
 
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rJMSF039O13+ CTTGTATTGATTTGTTGTCTATCACTTTGACTNTCAAATTTAAGTCAACNTTGNATACNG
                      ____________________________________________________________
consensus CTTGTATTGATTTGTTGTCTATCACTTTGACTNTCAAATTTAAGTCAACNTTGNATACNG
 
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rJMSF039O13+ GNTTTAGAAAAGAAAGAGAAGGAGTTGAAGGNTAAAGNGGNTGAACTGNGGNGGNGNGAA
                      ____________________________________________________________
consensus GNTTTAGAAAAGAAAGAGAAGGAGTTGAAGGNTAAAGNGGNTGAACTGNGGNGGNGNGAA
 
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rJMSF039O13+ CNGGCNTTGGNAAATNTAACCTTTACATGNGNTAATGCNTTTGNGTCCTGNTACTTTTTT
                      ____________________________________________________________
consensus CNGGCNTTGGNAAATNTAACCTTTACATGNGNTAATGCNTTTGNGTCCTGNTACTTTTTT
 
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rJMSF039O13+ TAAACTGCTAGCAAGNCTGCATTTGATAGACTCAGCTGNGNGCCCCCCTCATATTNTTAG
                      ____________________________________________________________
consensus TAAACTGCTAGCAAGNCTGCATTTGATAGACTCAGCTGNGNGCCCCCCTCATATTNTTAG
 
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rJMSF039O13+ ATGGNGTGCNGNGCGTACNGTACNTATAATGAACCTCAATATGTATGCCTNTTTTAGGAA
                      ____________________________________________________________
consensus ATGGNGTGCNGNGCGTACNGTACNTATAATGAACCTCAATATGTATGCCTNTTTTAGGAA