Contig 002947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039O13Sequence606004835 (186)sp|P04715.1|RBS2_PETHY1e-92RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast602002947 (2)ref|XP_006843115.1|6e-08hypothetical protein AMTR_s00140p00082700 [Amborella trichopoda] gb|ERN04790.1|
JMSF048G23Sequence678014000 (2)gb|AFN42875.1|6e-22glutamine synthetase [Camellia sinensis]619002947 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+                           GTAGAAAAAAGTACTAAATCATATTGAATTGCCCTCTCGCACA
                      ____________________________________________________________
consensus                              GTAGAAAAAAGTACTAAATCATATTGAATTGCCCTCTCGCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          AGCAATTTTCTACTGTTACTTGTTTGGTGCTTTGAATCAAAACGATAGTGTATTGACGTA
                      ____________________________________________________________
consensus             AGCAATTTTCTACTGTTACTTGTTTGGTGCTTTGAATCAAAACGATAGTGTATTGACGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          TTCTAACNTTGTACTACNGTTTGTAATATCAGCTGTTGTTAATTGTTTTGTGCGNGGNTG
                      ____________________________________________________________
consensus             TTCTAACNTTGTACTACNGTTTGTAATATCAGCTGTTGTTAATTGTTTTGTGCGNGGNTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          AATTAAAACTGTGTGATGGAAGGAACCCTAAATGNCAACTAAGCCGGAAATAAGGNGAAC
                      ____________________________________________________________
consensus             AATTAAAACTGTGTGATGGAAGGAACCCTAAATGNCAACTAAGCCGGAAATAAGGNGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          NACNATAAGCNGAAGNTTNAGNGNGCNATTGCNGNTTNTACCTAAGTGCGATTTGAGTAC
                      ____________________________________________________________
consensus             NACNATAAGCNGAAGNTTNAGNGNGCNATTGCNGNTTNTACCTAAGTGCGATTTGAGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          NGATNTTCCTAAATGGGTAATTNTTCAGCNCNTGCATTTGAATGTTCCTAATAATTCCAA
                      ____________________________________________________________
consensus             NGATNTTCCTAAATGGGTAATTNTTCAGCNCNTGCATTTGAATGTTCCTAATAATTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          GTTGAGGTTTTCCGCCTAAATACNTGNTAAGTGCTATTTACTCAGAGATAGGATCCTAAA
                      ____________________________________________________________
consensus             GTTGAGGTTTTCCGCCTAAATACNTGNTAAGTGCTATTTACTCAGAGATAGGATCCTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          GATTAACGTTGATGCNCNTGCNGNGNCTGGATAAAAAAAAAAGATAAGTTGAAGGGAATT
rJMSF039O13+                                                               GGGAATT
                      ____________________________________________________________
consensus             GATTAACGTTGATGCNCNTGCNGNGNCTGGATAAAAAAAAAAGATAAGTTGAAGGGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          TTACATGGCACTGGGAGCGTCCCCCTGCCACAAAGTCAAGGCATTCTCCCCTTCCTCCTG
rJMSF039O13+          TTACNTGGCNCTGGGNGNGTCCCCCTGCCNCAAAGTCAAGGCATTNTCCCCTTCCTCCTG
                      ____________________________________________________________
consensus             TTACATGGCACTGGGAGCGTCCCCCTGCCACAAAGTCAAGGCATTCTCCCCTTCCTCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048G23+          AACCAGCTGGTTTCTATAACAATGCCTCTAT                             
rJMSF039O13+          AACCAGTTNGTTTNTATAACAANGCCTNTATAANGGCTCTANTGATATTCCNCTTGATAG
                      ____________________________________________________________
consensus             AACCAGTTGGTTTCTATAACAATGCCTCTATAANGGCTCTANTGATATTCCNCTTGATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039O13+          CNCNCTGCGGTTCGNGNAACCNTTCATAACTGATGAATGCATACAACCATGTTCATCATT
                      ____________________________________________________________
consensus             CNCNCTGCGGTTCGNGNAACCNTTCATAACTGATGAATGCATACAACCATGTTCATCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039O13+          CTTGTATTGATTTGTTGTCTATCACTTTGACTNTCAAATTTAAGTCAACNTTGNATACNG
                      ____________________________________________________________
consensus             CTTGTATTGATTTGTTGTCTATCACTTTGACTNTCAAATTTAAGTCAACNTTGNATACNG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039O13+          GNTTTAGAAAAGAAAGAGAAGGAGTTGAAGGNTAAAGNGGNTGAACTGNGGNGGNGNGAA
                      ____________________________________________________________
consensus             GNTTTAGAAAAGAAAGAGAAGGAGTTGAAGGNTAAAGNGGNTGAACTGNGGNGGNGNGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039O13+          CNGGCNTTGGNAAATNTAACCTTTACATGNGNTAATGCNTTTGNGTCCTGNTACTTTTTT
                      ____________________________________________________________
consensus             CNGGCNTTGGNAAATNTAACCTTTACATGNGNTAATGCNTTTGNGTCCTGNTACTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039O13+          TAAACTGCTAGCAAGNCTGCATTTGATAGACTCAGCTGNGNGCCCCCCTCATATTNTTAG
                      ____________________________________________________________
consensus             TAAACTGCTAGCAAGNCTGCATTTGATAGACTCAGCTGNGNGCCCCCCTCATATTNTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039O13+          ATGGNGTGCNGNGCGTACNGTACNTATAATGAACCTCAATATGTATGCCTNTTTTAGGAA
                      ____________________________________________________________
consensus             ATGGNGTGCNGNGCGTACNGTACNTATAATGAACCTCAATATGTATGCCTNTTTTAGGAA