| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF015C03 | Sequence | 302 | 003617 (3) | emb|CDP09597.1| | 5e-18 | unnamed protein product [Coffea canephora] | 747 | 002946 (3) | ref|XP_009607053.1| | 1e-70 | PREDICTED: ubiquitin-associated domain-containing protein 2 isoform X2 [Nicotia |
| JMSF015G17 | Sequence | 481 | 003617 (3) | ref|XP_011075444.1| | 1e-37 | PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum] | 724 | 002946 (3) | ref|XP_011075444.1| | 3e-59 | PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum] |
| JMSF039N03 | Sequence | 669 | 003617 (3) | ref|XP_011075444.1| | 2e-51 | PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum] | 870 | 002946 (3) | ref|XP_011075444.1| | 1e-40 | PREDICTED: ubiquitin-associated domain-containing protein 2 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF039N03+ GATGTTTTTTTCTTTNTGAAGTTTGTAGGA
____________________________________________________________
consensus GATGTTTTTTTCTTTNTGAAGTTTGTAGGA
. : . : . : . : . : . :
rJMSF039N03+ AAAGTTTTCCATGTTGCCTTTCCTTTTTTATATGTTATCAGTACTCTGAATTTTTGTTTT
____________________________________________________________
consensus AAAGTTTTCCATGTTGCCTTTCCTTTTTTATATGTTATCAGTACTCTGAATTTTTGTTTT
. : . : . : . : . : . :
rJMSF039N03+ GCAGCTTCTTTTTTCATCTTGGAAAAGGTCTATTCTGCCGGGCCTCTGTGGAATTCTTGC
____________________________________________________________
consensus GCAGCTTCTTTTTTCATCTTGGAAAAGGTCTATTCTGCCGGGCCTCTGTGGAATTCTTGC
. : . : . : . : . : . :
rJMSF039N03+ TGGTTGCTTGTATCGTATGAATGTTTTCCGCATTCGGAGGGTGAAGTGTATATATTTTCT
____________________________________________________________
consensus TGGTTGCTTGTATCGTATGAATGTTTTCCGCATTCGGAGGGTGAAGTGTATATATTTTCT
. : . : . : . : . : . :
rJMSF015G17+ AGTTTCCAGATTTTATTGCTTCCTTCTTCTCCCGACTTTCCTGGCCATCCACAG
rJMSF015C03+ AGTTTCCAGATTTTATTGCTTCCTTCTTCTCCCGACTTTCCTGGCCATCCACAG
rJMSF039N03+ ATTTACAGTTTCCAGATTTTATTGCTTCCTTCTTCTCCCGACTTTCCTGGCCATCCACAG
____________________________________________________________
consensus ATTTACAGTTTCCAGATTTTATTGCTTCCTTCTTCTCCCGACTTTCCTGGCCATCCACAG
. : . : . : . : . : . :
rJMSF015G17+ GGAGCACACCATCTCCAGCACCAAGGAATGCTTTGGGAAATGTGCCATCATATGCAAGTC
rJMSF015C03+ GGAGCACACCATCTCCAGCACCAAGGAATGCTTTGGGAAATGTGCCATCATATGCAAGTC
rJMSF039N03+ GGAGCACACCATCTCCAGCACCAAGGAATGCTTTGGGAAATGTGCCATCATATGCAAGTC
____________________________________________________________
consensus GGAGCACACCATCTCCAGCACCAAGGAATGCTTTGGGAAATGTGCCATCATATGCAAGTC
. : . : . : . : . : . :
rJMSF015G17+ GCCAAGTTGAGGGAAACTATGCTGCTCCTTTGTCTTCTGCTGTAGAGCCACCTGAGGAAT
rJMSF015C03+ GCCAAGTTGAGGGAAACTATGCTGCTCCTTTGTCTTCTGCTGTAGAGCCACCTGAGGAAT
rJMSF039N03+ GCCAAGTTGAGGGAAACTATGCTGCTCCTTTGTCTTCTGCTGTAGAGCCACCTGAGGAAT
____________________________________________________________
consensus GCCAAGTTGAGGGAAACTATGCTGCTCCTTTGTCTTCTGCTGTAGAGCCACCTGAGGAAT
. : . : . : . : . : . :
rJMSF015G17+ CAATTACCACGCTAGTATCGATGGGCTTTGACAGAAACTCTGCTAGGCAGGCACTCATCC
rJMSF015C03+ CAATTACCACGCTAGTATCGATGGGCTTTGACAGAAACTCTGCTAGGCAGGCACTCATCC
rJMSF039N03+ CAATTACCACGCTAGTATCGATGGGCTTTGACAGAAACTCTGCTAGGCAGGCACTCATCC
____________________________________________________________
consensus CAATTACCACGCTAGTATCGATGGGCTTTGACAGAAACTCTGCTAGGCAGGCACTCATCC
. : . : . : . : . : . :
rJMSF015G17+ GTGCTAGAAATGACGTTAATGCTGCTACAAACATCCTTCTTGAATCACAGTGACAGCAAC
rJMSF015C03+ GTGCTAGAAATGACGTTAATGCTGCTACAAACATCCTTCTTGAATCACAGTGACAGCAAC
rJMSF039N03+ GTGCTAGAAATGACGTTAATGCTGCTACAAACATCCTTCTTGAATCACAGTGACAGCAAC
____________________________________________________________
consensus GTGCTAGAAATGACGTTAATGCTGCTACAAACATCCTTCTTGAATCACAGTGACAGCAAC
. : . : . : . : . : . :
rJMSF015G17+ TGGATTTGATATTTTTGCTTGGAGTAGGAAGGCAGGAAGATTTGGATTTTGGATACAGAG
rJMSF015C03+ TGGATTTGATATTTTTGCTTGGAGTAGGAAGGCAGGAAGATTTGGATTTTGGATACAGAG
rJMSF039N03+ TGGATTTGATATTTTTGCTTGGAGTAGGAAGGCAGGAAGATTTGGATTTTGGATACAGAG
____________________________________________________________
consensus TGGATTTGATATTTTTGCTTGGAGTAGGAAGGCAGGAAGATTTGGATTTTGGATACAGAG
. : . : . : . : . : . :
rJMSF015G17+ AATTTGCATAAAAAAGAAGATCCAGCTAGCCCTTTAACATCACCATTATTACACCTCTGA
rJMSF015C03+ AATTTGCATAAAAAAGAAGATCCAGCTAGCCCTTTAACATCACCATTATTACACCTCTGA
rJMSF039N03+ AATTTGCATAAAAAAGAAGATCCAGCTAGCCCTTTAACATCACCATTATTACACCTCTGA
____________________________________________________________
consensus AATTTGCATAAAAAAGAAGATCCAGCTAGCCCTTTAACATCACCATTATTACACCTCTGA
. : . : . : . : . : . :
rJMSF015G17+ AGATCCAGTCAAGCCACAAAGGCTTTTGTCTTTCATTTTGTATAACCTCGGCATGGCATT
rJMSF015C03+ AGATCCAGTCAAGCCACAAAGGCTTTTGTCTTTCATTTTGTATAACCTCGGCATGGCATT
rJMSF039N03+ AGATCCAGTCAAGCCACAAAGGCTTTTGTCTTTCATTTTGTATAACCTCGGCATGGCATT
____________________________________________________________
consensus AGATCCAGTCAAGCCACAAAGGCTTTTGTCTTTCATTTTGTATAACCTCGGCATGGCATT
. : . : . : . : . : . :
rJMSF015G17+ CGGTATTTAAGCACTAGTCGTCAATCTAAAGACCACTCGTTTGATGGCTTAGATGATGAG
rJMSF015C03+ CGGTATTTAAGCACTAGTCGTCAATCTAAAGACCACTCGTTTGATGGCTTAGATGATGAG
rJMSF039N03+ CGGTATTTAAGCACTAGTCGTCAATCTAAAGACCACTCGTTTGATGGCTTAGATGATGAG
____________________________________________________________
consensus CGGTATTTAAGCACTAGTCGTCAATCTAAAGACCACTCGTTTGATGGCTTAGATGATGAG
. : . : . : . : . : . :
rJMSF015G17+ TTTTTCATTTTCCCGAACATTTAAAGATTTGTGAAATATTAGGGGGTATGCATTGATAAG
rJMSF015C03+ TTTTTCATTTTCCCGAACATTTAAAGATTTGTGAAATATTAGGGGGTATGCATTGATAAG
rJMSF039N03+ TTTTTCATTTTCCCGAACATTTAAAGATTTGTGAAATATTAGGGGGTATGCATTGATAAG
____________________________________________________________
consensus TTTTTCATTTTCCCGAACATTTAAAGATTTGTGAAATATTAGGGGGTATGCATTGATAAG
. : . : . : . : . : . :
rJMSF015G17+ GAATTAGACCACTTTATTGTGTCAGACTGGAATATGCTATTAGGCT
rJMSF015C03+ GAATTAGACCACTTTATT
rJMSF039N03+ GAATTAGACCACTTTATTGTGTCAGACTGGAATATGCTATTAGGCTGTAAAGATGACATT
____________________________________________________________
consensus GAATTAGACCACTTTATTGTGTCAGACTGGAATATGCTATTAGGCTGTAAAGATGACATT