Contig 002945:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003H02Sequence355004928 (2)658002945 (3)emb|CDP06508.1|2e-58unnamed protein product [Coffea canephora]
JMSF039L02Sequence658008090 (3)ref|XP_003516943.1|181PREDICTED: uncharacterized protein LOC100780899 [Glycine max]847002945 (3)gb|KJB17031.1|7e-103hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth
JMSF050F09Sequence677008090 (3)ref|XP_003516943.1|174PREDICTED: uncharacterized protein LOC100780899 [Glycine max]738002945 (3)gb|KJB17031.1|7e-97hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth

Alignment

This contig is upended


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rJMSF039L02+                                                               GTTGAGA
                      ____________________________________________________________
consensus                                                                  GTTGAGA
 
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rJMSF050F09+                             AAGGGTTATGGATAGACTTCCTGAAGCTCGGATAGCTTTCA
rJMSF039L02+          AGAGCTTGGATTTCCTTAAAAGGGTTATGGATAGACTTCCTGAAGCTCGGATAGCTTTCA
                      ____________________________________________________________
consensus             AGAGCTTGGATTTCCTTAAAAGGGTTATGGATAGACTTCCTGAAGCTCGGATAGCTTTCA
 
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rJMSF050F09+          TAGGCGATGGACCATACAGGGAGGAACTGGAGGAATTGTTCTCTGGCATGCCTGCTGTGT
rJMSF039L02+          TAGGCGATGGACCATACAGGGAGGAACTGGAGGAATTGTTCTCTGGCATGCCTGCTGTGT
                      ____________________________________________________________
consensus             TAGGCGATGGACCATACAGGGAGGAACTGGAGGAATTGTTCTCTGGCATGCCTGCTGTGT
 
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rJMSF050F09+          TCACGGGTACGCTACAAGGGGAGGAGCTATCTCGGGCATACGCCAGTGGGGACGTTTTCG
rJMSF003H02+                                                                     G
rJMSF039L02+          TCACGGGTACGCTACAAGGGGAGGAGCTATCTCGGGCATACGCCAGTGGGGACGTTTTCG
                      ____________________________________________________________
consensus             TCACGGGTACGCTACAAGGGGAGGAGCTATCTCGGGCATACGCCAGTGGGGACGTTTTCG
 
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rJMSF050F09+          TAATGCCTTCAGAATCCGAGACACTTGGCCTCGTTGTTCTAGAGGCCATGTCTTCTGGAA
rJMSF003H02+          TAATGCCTTCAGAATCCGAGACACTNGGCCTCGTTGNTCTAGAGGCCATGTCTTCTGGAA
rJMSF039L02+          TAATGCCTTCAGAATCCGAGACACTTGGCCTCGTTGTTCTAGAGGCCATGTCTTCTGGAA
                      ____________________________________________________________
consensus             TAATGCCTTCAGAATCCGAGACACTTGGCCTCGTTGTTCTAGAGGCCATGTCTTCTGGAA
 
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rJMSF050F09+          TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
rJMSF003H02+          TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
rJMSF039L02+          TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
                      ____________________________________________________________
consensus             TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
 
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rJMSF050F09+          GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
rJMSF003H02+          GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
rJMSF039L02+          GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
                      ____________________________________________________________
consensus             GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
 
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rJMSF050F09+          CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
rJMSF003H02+          CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
rJMSF039L02+          CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
                      ____________________________________________________________
consensus             CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
 
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rJMSF050F09+          AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
rJMSF003H02+          AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
rJMSF039L02+          AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
                      ____________________________________________________________
consensus             AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
 
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rJMSF050F09+          TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
rJMSF003H02+          TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
rJMSF039L02+          TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
                      ____________________________________________________________
consensus             TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
 
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rJMSF050F09+          GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
rJMSF003H02+          GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
rJMSF039L02+          GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
                      ____________________________________________________________
consensus             GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
 
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rJMSF050F09+          TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
rJMSF003H02+          TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
rJMSF039L02+          TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
                      ____________________________________________________________
consensus             TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
 
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rJMSF050F09+          GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
rJMSF003H02+          GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
rJMSF039L02+          GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
                      ____________________________________________________________
consensus             GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
 
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rJMSF050F09+          TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTAT                       
rJMSF003H02+          TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTATGATTTTAGCAACTTGTAAGAAAT
rJMSF039L02+          TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTATGATTTTAGCAACTTGTAAGAAAT
                      ____________________________________________________________
consensus             TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTATGATTTTAGCAACTTGTAAGAAAT
 
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rJMSF003H02+          AAAGGCTCCTGTTAGGATCAAATGCTTATTATTACGTCAAAAAG                
rJMSF039L02+          AAAGGCTCCTGTTAGGATCAAATGCTTATTATTACGTCAAAAAGTTTATTTTAGGTGGGG
                      ____________________________________________________________
consensus             AAAGGCTCCTGTTAGGATCAAATGCTTATTATTACGTCAAAAAGTTTATTTTAGGTGGGG