| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001C20 | Sequence | 350 | 000539 (2) | 817 | 002944 (3) | ref|XP_009802956.1| | 2e-87 | PREDICTED: KH domain-containing protein At4g18375 [Nicotiana sylvestris] | |||
| JMSF005K23 | Sequence | 372 | 000539 (2) | ref|XP_004234980.1| | 1e-10 | PREDICTED: KH domain-containing protein At4g18375 [Solanum lycopersicum] | 337 | 002944 (3) | ref|XP_004234980.1| | 3e-24 | PREDICTED: KH domain-containing protein At4g18375 [Solanum lycopersicum] |
| JMSF039E13 | Sequence | 620 | 023260 | ref|XP_009802956.1| | 8e-73 | PREDICTED: KH domain-containing protein At4g18375 [Nicotiana sylvestris] | 905 | 002944 (3) | ref|XP_006350524.1| | 5e-86 | PREDICTED: KH domain-containing protein At4g18375-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF039E13+ CTGCCAT
____________________________________________________________
consensus CTGCCAT
. : . : . : . : . : . :
rJMSF039E13+ TGTTGATCTTGTTCCAGAAAAAGGAAAACATTGTCACAACCCGGTTAGTTGTGCAATCAG
____________________________________________________________
consensus TGTTGATCTTGTTCCAGAAAAAGGAAAACATTGTCACAACCCGGTTAGTTGTGCAATCAG
. : . : . : . : . : . :
rJMSF001C20+ TGACATACAGAAAATGAGT
rJMSF039E13+ ATGAAGTTGGATGCTTAGGAGGGAGAGATGGTGCATTTGTCTGACATACAGAAAATGAGT
____________________________________________________________
consensus ATGAAGTTGGATGCTTAGGAGGGAGAGATGGTGCATTTGTCTGACATACAGAAAATGAGT
. : . : . : . : . : . :
rJMSF001C20+ GGTGCAGATGTACATATTCTTCCAAAGGAAGGACTTCCATCATGTCTATCCGACACTGAT
rJMSF039E13+ GGTGCAGATGTACATATTCTTCCAAAGGNAGAACTTCCATCATGTCTATCCGACACTGAT
____________________________________________________________
consensus GGTGCAGATGTACATATTCTTCCAAAGGAAGGACTTCCATCATGTCTATCCGACACTGAT
. : . : . : . : . : . :
rJMSF001C20+ GAGATTGTACAGATTGTTGGCGAGATAAAAGCAGCTAGAGAGGCACTTATTGAGGTGACA
rJMSF039E13+ GAGATT--ACAGATTGTTGGCGAGATAAAAGCAGCTAGAGAGGCACTTATTGAGGTGACA
____________________________________________________________
consensus GAGATTGTACAGATTGTTGGCGAGATAAAAGCAGCTAGAGAGGCACTTATTGAGGTGACA
. : . : . : . : . : . :
rJMSF001C20+ ACAAGGCTAAGGGGTTACACTTATCGGGAACTCTTCCAGAAAGAGACACCACCTCCAATA
rJMSF039E13+ ACAAGGCTAAGGAGTTACACTTATCGGGAACTCTTCCAGAAAGAGACACCACCTCCAATA
____________________________________________________________
consensus ACAAGGCTAAGGGGTTACACTTATCGGGAACTCTTCCAGAAAGAGACACCACCTCCAATA
. : . : . : . : . : . :
rJMSF001C20+ TCTGCTCCCAGCCCTATGGGGAATTTAAGTGGAGCTGAGACAGCTTCTTTGAACAACAAT
rJMSF039E13+ TCTGCTCCCAGCCCTATGGGGAATTTAAGTGGAGCTGAGACAGCTTCTTTGAACAACAAT
____________________________________________________________
consensus TCTGCTCCCAGCCCTATGGGGAATTTAAGTGGAGCTGAGACAGCTTCTTTGAACAACAAT
. : . : . : . : . : . :
rJMSF001C20+ TCTCTGTCTCAAGAAAATCATACTGTAACTGACCCTGCTGCTTCAATTCATCAAAATGGA
rJMSF039E13+ TCTCTGTCTCAAGAAAATCATACTGTAACTGACCCTGCTGCTTCAATTCATCAAAATGGA
____________________________________________________________
consensus TCTCTGTCTCAAGAAAATCATACTGTAACTGACCCTGCTGCTTCAATTCATCAAAATGGA
. : . : . : . : . : . :
rJMSF001C20+ CCAAATATACCAACACCTCATTCATTAAAGGATGCTGGAGCCCCTGTGAGCGAGATAGCA
rJMSF039E13+ CCAAATATACCAACACCTCATTCATTAAAGGATGCTGGAGCCCCTGTGAGCGAGATAGCA
____________________________________________________________
consensus CCAAATATACCAACACCTCATTCATTAAAGGATGCTGGAGCCCCTGTGAGCGAGATAGCA
. : . : . : . : . : . :
rJMSF001C20+ AAGCAAAATGACAGTGAGCGTCTTAAAGATATGCCAAGTGGATTGAATAGAATACCTGTA
rJMSF039E13+ AAGCAAAATGACAGTGAGCGTCTTAAAGATATGTCAAGTGGATTGAATAGAATACCTGTA
____________________________________________________________
consensus AAGCAAAATGACAGTGAGCGTCTTAAAGATATGTCAAGTGGATTGAATAGAATACCTGTA
. : . : . : . : . : . :
rJMSF001C20+ CCATTGGTCACTAGGAGTACATTGGAAGTTGTCATTCCACCACATGCAGCTCCAAAACTA
rJMSF005K23+ GGAGTACATNGGAAGTTGTCATTCCACCACATGCAGCTCCAAAAGTA
rJMSF039E13+ CCATTGGTCACTAGGAGTACATTGGAAGTTGTCATTCCACCACATGCAGCTCCAAAACTA
____________________________________________________________
consensus CCATTGGTCACTAGGAGTACATTGGAAGTTGTCATTCCACCACATGCAGCTCCAAAACTA
. : . : . : . : . : . :
rJMSF001C20+ ATAACCAAATCAAGAAACAAGCTTGCTCAGATCAGTGAGTTGTCAGGAGCCACTGTAAAA
rJMSF005K23+ ATAACCAAATCAAGAAACAAGCTTGCTCAGATCAGTGAGTTGTCAGGAGCCACTGTAAAA
rJMSF039E13+ ATAACCAAATCAAGAAACAAGCTTGCTCAGATCAGTGAGTTGTCAGGAGCCACTGTAAAA
____________________________________________________________
consensus ATAACCAAATCAAGAAACAAGCTTGCTCAGATCAGTGAGTTGTCAGGAGCCACTGTAAAA
. : . : . : . : . : . :
rJMSF001C20+ TTGATTGAAGATAGACCGGAAGTAACAGAGAAGATTATCCAAATATCGGGTACACCAGAT
rJMSF005K23+ TTGATTGAAGATAGACCGGAAGTAACAGAGAAGATTATCC-AATATCGGGTACACCAGAT
rJMSF039E13+ TTGATTGAAGATAGACCGGAAGTAACAGAGAAGATTATCCAAATATCGGGTACACCAGAT
____________________________________________________________
consensus TTGATTGAAGATAGACCGGAAGTAACAGAGAAGATTATCCAAATATCGGGTACACCAGAT
. : . : . : . : . : . :
rJMSF001C20+ CAAGCTG--ACAGCTCAGAGCTTGCTTCAAGGATTTATTTTAAGTACTCAAGAAGACGGC
rJMSF005K23+ CAAGCTGAAAGAGCTCAGAGCTTGCTTCAAGGATTTATTTTAAGTACTCAAGAAGACGGC
rJMSF039E13+ CAAGCTGAAAGAGCTCAGAGCTTGCTTCAAGGATTTATTTTAAGTACTCAAGAAGACGGC
____________________________________________________________
consensus CAAGCTGAAAGAGCTCAGAGCTTGCTTCAAGGATTTATTTTAAGTACTCAAGAAGACGGC
. : . : . : . : . : . :
rJMSF001C20+ CTCTGAACAGACATGGACAATTTTGCATTGCTGACGGACGACAAGATGCCAAGTTCTTTA
rJMSF005K23+ CTCTGAACAGACATGGACAATTTTGCATTGCTGACGGACGACAAGATGCCAAGTTCTTTA
rJMSF039E13+ CTCTGAACAGACATGGACAATTTTGCATTGCTGACGGACGACAAGATGCCAAGTTCTTTA
____________________________________________________________
consensus CTCTGAACAGACATGGACAATTTTGCATTGCTGACGGACGACAAGATGCCAAGTTCTTTA
. : . : . : . : . : . :
rJMSF001C20+ TCTTGCAGTTCTCATGTACGGGATCGTGTCCCTGATTTTCGCATTATAATAGGGCAGGGC
rJMSF005K23+ TCTTGCAGTTCTCATGTACGGGATCGTGTCCCTGATTTTCGCATT
rJMSF039E13+ TCTTGCAGTTCTCATGTACGGGATCGTGTCCCTGATTTTCGCATTATAATAGGGCAGGGC
____________________________________________________________
consensus TCTTGCAGTTCTCATGTACGGGATCGTGTCCCTGATTTTCGCATTATAATAGGGCAGGGC