Contig 002943:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF038L06+                           AACTTAGGAAAGATTACATAAATGGGGAAAGAGTGAACTTTTA
                      ____________________________________________________________
consensus                              AACTTAGGAAAGATTACATAAATGGGGAAAGAGTGAACTTTTA
 
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rJMSF038L06+          TGTATCCAAGTGCTGTTGATCAATTCAGGAAACAGTTTGCTCACCTGGAAGAAAATGGTG
                      ____________________________________________________________
consensus             TGTATCCAAGTGCTGTTGATCAATTCAGGAAACAGTTTGCTCACCTGGAAGAAAATGGTG
 
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rJMSF036P12+                           CCAGCAGAAAGAAAACATGTATCTCTTCCTAGATCTTCAGTTA
rJMSF038L06+          GTAAAATTGGGCCTCTTCCAGCAGAAAGAAAACATGTATCTCTTCCTAGATCTTCAGTTA
                      ____________________________________________________________
consensus             GTAAAATTGGGCCTCTTCCAGCAGAAAGAAAACATGTATCTCTTCCTAGATCTTCAGTTA
 
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rJMSF036P12+          TACATTCCACTACAATCCCTGTAAAGAGACAAACAGCTGCTGTTAATATGAAAGATCAGC
rJMSF038L06+          TACATTCCACTACAATCCCTGTAAAGAGACAAACAGCTGCTGTTAATATGAAAGATCAGC
                      ____________________________________________________________
consensus             TACATTCCACTACAATCCCTGTAAAGAGACAAACAGCTGCTGTTAATATGAAAGATCAGC
 
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rJMSF036P12+          AAAATGGGGTAGAGTCCTGCAATAGAAACACCTTCAGAGAACCTGATAGAGGTCCAAGAG
rJMSF038L06+          AAAATGGGGTAGAGTCCTGCAATAGAAACACCTTCAGAGAACCTGATAGAGGTCCAAGAG
                      ____________________________________________________________
consensus             AAAATGGGGTAGAGTCCTGCAATAGAAACACCTTCAGAGAACCTGATAGAGGTCCAAGAG
 
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rJMSF036P12+          CGGTGGTGGTGCAACCCCAACAGAGGATTTCCCAGGGGGCGAAACCAGGAAAGGTTGTTG
rJMSF038L06+          CGGTGGTGGTGCAACCCCAACAGAGGATTTCCCAGGGGGCGAAACCAGGAAAGGTTGTTG
                      ____________________________________________________________
consensus             CGGTGGTGGTGCAACCCCAACAGAGGATTTCCCAGGGGGCGAAACCAGGAAAGGTTGTTG
 
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rJMSF036P12+          GTCCAACTGTACCTTATGAGACCGGAAGTAAAGAGGCATTTGAGCAGCAGAGAAATGTAA
rJMSF038L06+          GTCCAACTGTACCTTATGAGACCGGAAGTAAAGAGGCATTTGAGCAGCAGAGAAATGTAA
                      ____________________________________________________________
consensus             GTCCAACTGTACCTTATGAGACCGGAAGTAAAGAGGCATTTGAGCAGCAGAGAAATGTAA
 
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rJMSF036P12+          TCAGGAGTACAATTAGGACGCCTTCGCAGATTATGCCTTCGACATATTGTTACCAGAGAT
rJMSF038L06+          TCAGGAGTACAATTAGGACGCCTTCGCAGATTATGCCTTCGACATATTGTTACCAGAGAT
                      ____________________________________________________________
consensus             TCAGGAGTACAATTAGGACGCCTTCGCAGATTATGCCTTCGACATATTGTTACCAGAGAT
 
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rJMSF036P12+          TTGGGGCAGCAGCCAAGCAGGAAAGACCTGTAACCGAGGCACAGAAGGAGGTGGTGCCAT
rJMSF038L06+          TTGGGGCAGCAGCCAAGCAGGAAAGACCTGTAACCGAGGCACAGAAGGAGGTGGTGCCAT
                      ____________________________________________________________
consensus             TTGGGGCAGCAGCCAAGCAGGAAAGACCTGTAACCGAGGCACAGAAGGAGGTGGTGCCAT
 
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rJMSF036P12+          CTTCACAACACGTCAAACCTATAGTTCACTGCGGCATGGCTGCCAAATTAGCACCAGATA
rJMSF038L06+          CTTCACAACACGTCAAACCTATAGTTCACTGCGGCATGGCTGCCAAATTAGCACCAGATA
                      ____________________________________________________________
consensus             CTTCACAACACGTCAAACCTATAGTTCACTGCGGCATGGCTGCCAAATTAGCACCAGATA
 
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rJMSF036P12+          TCGCCATCACTATTGACAGCAACCCATTCTATATGACACGGGGGGGTGGAGTGAAAAAGC
rJMSF038L06+          TCGCCATCACTATTGACAGCAACCCATTCTATATGACACGGGGGGGTGGAGTGAAAAAGC
                      ____________________________________________________________
consensus             TCGCCATCACTATTGACAGCAACCCATTCTATATGACACGGGGGGGTGGAGTGAAAAAGC
 
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rJMSF036P12+          CCCCCGGGGATCATGTTAGTGATGGAATCAGCATCGACACTAACTTTCTGCAGACAAAAG
rJMSF038L06+          CCCCCGGGGATCATGTTAGTGATGGAATCAGCATCGACACTAACTTTCTGCAGACAAAAG
                      ____________________________________________________________
consensus             CCCCCGGGGATCATGTTAGTGATGGAATCAGCATCGACACTAACTTTCTGCAGACAAAAG
 
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rJMSF036P12+          CTCAATACGGTGGTATTGGCATGGCTGCTGCAACAGCAGCAAATGCTTCTGCTGCTCATA
rJMSF038L06+          CTCAATACGGTGGTATTGGCATGGCTGCTGCAACAGCAGCAAATGCTTCTGCTGCTCATA
                      ____________________________________________________________
consensus             CTCAATACGGTGGTATTGGCATGGCTGCTGCAACAGCAGCAAATGCTTCTGCTGCTCATA
 
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rJMSF036P12+          GAAAAATGGGGACTGTTCAGTTTGGCATGTCAAGGATGTACTAGGGAGATCGAAATGTAT
rJMSF038L06+          GAAAAATGGGGACTGTTCAGTTTGGCATGTCAAGGATGTACTAGGGAGATCGAAATGTAT
                      ____________________________________________________________
consensus             GAAAAATGGGGACTGTTCAGTTTGGCATGTCAAGGATGTACTAGGGAGATCGAAATGTAT
 
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rJMSF036P12+          AGAGAATG                                                    
rJMSF038L06+          AGAGAATGGGATTATTACACTTTAGAAAAGCTGGTTTTCTTTAGTTACTCAGACACTATT
                      ____________________________________________________________
consensus             AGAGAATGGGATTATTACACTTTAGAAAAGCTGGTTTTCTTTAGTTACTCAGACACTATT