Contig 002941:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038F16Sequence706002941 (2)ref|XP_009608871.1|6e-49PREDICTED: auxin-responsive protein IAA20-like [Nicotiana tomentosiformis]840002941 (2)ref|XP_009767450.1|2e-48PREDICTED: auxin-responsive protein IAA29-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF038F16-          TATTCTACCCAAAATAGCTATTAAAAGCTCAAATAGAGATTGTATAATAATAATAAGGAA
                      ____________________________________________________________
consensus             TATTCTACCCAAAATAGCTATTAAAAGCTCAAATAGAGATTGTATAATAATAATAAGGAA
 
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rJMSF038F16-          AATAGAAAACATTAAGAACAAAAGGGAGAAACATATATCCATAATATAATCCAGACACTT
                      ____________________________________________________________
consensus             AATAGAAAACATTAAGAACAAAAGGGAGAAACATATATCCATAATATAATCCAGACACTT
 
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JMSF038F16+                         TGCTCATTCCCTTTTCTTAACCACTTTTAGTCTATGCACTGACTGG
rJMSF038F16-          GAGACAATCTGATCTGCTCATTCCCTTTTCTTAACCACTTTTAGTCTATGCACTGACTGG
                      ____________________________________________________________
consensus             GAGACAATCTGATCTGCTCATTCCCTTTTCTTAACCACTTTTAGTCTATGCACTGACTGG
 
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JMSF038F16+           ATGAATGTTCTCCATGCTACATCCCCTGCAACCACCCACACACCTTCCTNGTCTTCATAA
rJMSF038F16-          ATGAATGTTCTCCATGCTACATCCCCTGCAACCACCCACACACCTTCCTTGTCTTCATAA
                      ____________________________________________________________
consensus             ATGAATGTTCTCCATGCTACATCCCCTGCAACCACCCACACACCTTCCTTGTCTTCATAA
 
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JMSF038F16+           GTCAGCTTATATGCCTCCACTTCTTCCTCACTTCTTCCAAACATGGCAATTAAGGTGTTA
rJMSF038F16-          GTCAGCTTATATGCCTCCACTTCTTCCTCACTTCTTCCAAACATGGCAATTAAGGTGTTA
                      ____________________________________________________________
consensus             GTCAGCTTATATGCCTCCACTTCTTCCTCACTTCTTCCAAACATGGCAATTAAGGTGTTA
 
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JMSF038F16+           GTGAGTGTTTGGTAAGAGTGATGAGCAGTTAGGTCAATCTTTCTTGCTATTCCTACACCC
rJMSF038F16-          GTGAGTGTTTGGTAAGAGTGATGAGCAGTTAGGTCAATCTTTCTTGCTATTCCTACACCC
                      ____________________________________________________________
consensus             GTGAGTGTTTGGTAAGAGTGATGAGCAGTTAGGTCAATCTTTCTTGCTATTCCTACACCC
 
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JMSF038F16+           TCCATCTTCACCTTCACAAACACCGAGTTGTTTAATCTTCTCCGGTGGCCGCCGCCGCCG
rJMSF038F16-          TCCATCTTCACCTTCACAAACACCGAGTTGTTTAATCTTCTCCGGTGGCCGCCGCCGCCG
                      ____________________________________________________________
consensus             TCCATCTTCACCTTCACAAACACCGAGTTGTTTAATCTTCTCCGGTGGCCGCCGCCGCCG
 
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JMSF038F16+           CCATTCTCCACATTCACCTCGCAGCAGCGGTGGCGCTGCTGGTGGTAGAGCTTCCTTCTT
rJMSF038F16-          CCATTCTCCACATTCACCTCGCAGCAGCGGTGGCGCTGCTGGTGGTAGAGCTTCCTTCTT
                      ____________________________________________________________
consensus             CCATTCTCCACATTCACCTCGCAGCAGCGGTGGCGCTGCTGGTGGTAGAGCTTCCTTCTT
 
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JMSF038F16+           ACTGAGTTGATGGGAGGCCAACCCACCACACCTTCTTCATCCCCATCTTCTCTGTTAGTA
rJMSF038F16-          ACTGAGTTGATGGGAGGCCAACCCACCACACCTTCTTCATCCCCATCTTCTCTGTTAGTA
                      ____________________________________________________________
consensus             ACTGAGTTGATGGGAGGCCAACCCACCACACCTTCTTCATCCCCATCTTCTCTGTTAGTA
 
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JMSF038F16+           TTGGTAGAGTTTCTATCCTCATTATTCGTGTGATGAGGATTCTTGTCCCAAACAAGCAAA
rJMSF038F16-          TTGGTAGAGTTTCTATCCTCATTATTCGTGTGATGAGGATTCTTGTCCCAAACAAGCAAA
                      ____________________________________________________________
consensus             TTGGTAGAGTTTCTATCCTCATTATTCGTGTGATGAGGATTCTTGTCCCAAACAAGCAAA
 
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JMSF038F16+           GGCAAAGTTGGAATCACTTCAACATCATTCTCTGCCCCAGACTCCTCCTTAGACTCAGAG
rJMSF038F16-          GGCAAAGTTGGAATCACTTCAACATCATTCTCTGCCCCAGACTCCTCCTTAGACTCAGAG
                      ____________________________________________________________
consensus             GGCAAAGTTGGAATCACTTCAACATCATTCTCTGCCCCAGACTCCTCCTTAGACTCAGAG
 
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JMSF038F16+           GCTTCGTCAAATCTTCTGCGCTTCTTCATTTTTTGACCACAATTCTTGTTGGCTTCATTA
rJMSF038F16-          GCTTCGTCAAATCTTCTGCGCTTCTTCATTTTTTGACCACAATTCTTGTTGGCTTCATTA
                      ____________________________________________________________
consensus             GCTTCGTCAAATCTTCTGCGCTTCTTCATTTTTTGACCACAATTCTTGTTGGCTTCATTA
 
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JMSF038F16+           ACTTCCCAGCAATTAAGCTCAAACCCAGTTCTAGGAAGAGCCAGTCCCAGTTGAAGATCC
rJMSF038F16-          ACTTCCCAGCAATTAAGCTCAAACCCAGTTCTAGGAAGAGCCAGTCCCAGTTGAAGATCC
                      ____________________________________________________________
consensus             ACTTCCCAGCAATTAAGCTCAAACCCAGTTCTAGGAAGAGCCAGTCCCAGTTGAAGATCC
 
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JMSF038F16+           ATCATACTCATCCCACAGAACAACACTGATATCTATTTTCAAAGTTTCTGATATGATACC
rJMSF038F16-          ATCATACTCATCCCACAGAACAACACTGATATCTATTTTCAAAGTTTCTGATATGATACC
                      ____________________________________________________________
consensus             ATCATACTCATCCCACAGAACAACACTGATATCTATTTTCAAAGTTTCTGATATGATACC