Contig 002940:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038E18Sequence630002940 (2)ref|XP_004236791.1|254PREDICTED: uncharacterized protein LOC101248473 [Solanum lycopersicum]893002940 (2)ref|XP_002266453.1|353PREDICTED: uncharacterized protein LOC100243269 [Vitis vinifera] emb|CBI22390.3|

Alignment

This contig is upended


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JMSF038E18-                  GAGTTCTCGCACGGAATCGGAGCATACAGAAACCATGGCATTCACTATATCGC
                      ____________________________________________________________
consensus                    GAGTTCTCGCACGGAATCGGAGCATACAGAAACCATGGCATTCACTATATCGC
 
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JMSF038E18-           CAAACTCAATTCATCTCCCACAAAGCTCTCGATTTTCTGGGAGAAATTCTTTTCTCAGAG
                      ____________________________________________________________
consensus             CAAACTCAATTCATCTCCCACAAAGCTCTCGATTTTCTGGGAGAAATTCTTTTCTCAGAG
 
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JMSF038E18-           CCTCTGTTCCACCTCCAATCTTATCCCCTCCGTCTCTCAGGTTTCCTATAAAGTGCTTAG
                      ____________________________________________________________
consensus             CCTCTGTTCCACCTCCAATCTTATCCCCTCCGTCTCTCAGGTTTCCTATAAAGTGCTTAG
 
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JMSF038E18-           CAAATAGGCTGGTGGTCTGTGCTGCATCCTCAGCTGCAGGAAGTTCAAGCTCAAACAGTG
                      ____________________________________________________________
consensus             CAAATAGGCTGGTGGTCTGTGCTGCATCCTCAGCTGCAGGAAGTTCAAGCTCAAACAGTG
 
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JMSF038E18-           ACTTAAATCCTTATGAGGTTCTTGGTGTGAGCCCCATTGAGGGATTTGATATGATAAAGG
rJMSF038E18+                 TCCTTATGAGGTTCTTGGTGTGAGCCCCATTGAGGGATTTGATATGATAAAGG
                      ____________________________________________________________
consensus             ACTTAAATCCTTATGAGGTTCTTGGTGTGAGCCCCATTGAGGGATTTGATATGATAAAGG
 
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JMSF038E18-           CATCATATACGAGGAAACGTAAAGAAGCTGAAAAGAGGGGTGATGAAGCAACTGCTGCAG
rJMSF038E18+          CATCATATACGAGGAAACGTAAAGAAGCTGAAAAGAGGGGTGATGAAGCAACTGCTGCAG
                      ____________________________________________________________
consensus             CATCATATACGAGGAAACGTAAAGAAGCTGAAAAGAGGGGTGATGAAGCAACTGCTGCAG
 
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JMSF038E18-           AACTCGAAATGGCATATGACAAGATCATGATGTCACAACTAACCAAGAGAAAGAAAGGTG
rJMSF038E18+          AACTCGAAATGGCATATGACAAGATCATGATGTCACAACTAACCAAGAGAAAGAAAGGTG
                      ____________________________________________________________
consensus             AACTCGAAATGGCATATGACAAGATCATGATGTCACAACTAACCAAGAGAAAGAAAGGTG
 
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JMSF038E18-           TTACATTTGGATCATTTAAGGTTTCAAAGGAGATAAAGTATGCTGATAAGCAGCCTATTG
rJMSF038E18+          TTACATTTGGATCATTTAAGGTTTCAAAGGAGATAAAGTATGCTGATAAGCAGCCTATTG
                      ____________________________________________________________
consensus             TTACATTTGGATCATTTAAGGTTTCAAAGGAGATAAAGTATGCTGATAAGCAGCCTATTG
 
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JMSF038E18-           TACCATGGGGTCCCAGGTTCAGCAAATCAGAAGTCAAAGATATACGGATCAATATGGCAA
rJMSF038E18+          TACCATGGGGTCCCAGGTTCAGCAAATCAGAAGTCAAAGATATACGGATCAATATGGCAA
                      ____________________________________________________________
consensus             TACCATGGGGTCCCAGGTTCAGCAAATCAGAAGTCAAAGATATACGGATCAATATGGCAA
 
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JMSF038E18-           TTTCTGCTGTATTTACTGCCTGGGCTTTTATCCAGCGCAATGGTGAATGGAAGCCTTTGC
rJMSF038E18+          TTTCTGCTGTATTTACTGCCTGGGCTTTTATCCAGCGCAATGGTGAATGGAAGCCTTTGC
                      ____________________________________________________________
consensus             TTTCTGCTGTATTTACTGCCTGGGCTTTTATCCAGCGCAATGGTGAATGGAAGCCTTTGC
 
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JMSF038E18-           AATTCCTGGCCTTTGCGTTTGTATACAGGATTTTCGA                       
rJMSF038E18+          AATTCCTGGCCTTTGCGTTTGTATACAGGATTTTCGAAAAATTAAAAGCGTTCGAATCTC
                      ____________________________________________________________
consensus             AATTCCTGGCCTTTGCGTTTGTATACAGGATTTTCGAAAAATTAAAAGCGTTCGAATCTC
 
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rJMSF038E18+          CTGTGTCTCCTACATTTACCGAAGAAGGCGAGGATGATGGGCGAATGATGAGGATGGGAA
                      ____________________________________________________________
consensus             CTGTGTCTCCTACATTTACCGAAGAAGGCGAGGATGATGGGCGAATGATGAGGATGGGAA
 
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rJMSF038E18+          AAAGGCTACTTCGATCTCTTGCACTGGCTTTTGGGTGCATTGCAGTTGCATCTTTGGGAT
                      ____________________________________________________________
consensus             AAAGGCTACTTCGATCTCTTGCACTGGCTTTTGGGTGCATTGCAGTTGCATCTTTGGGAT
 
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rJMSF038E18+          ATACCGGCCTCCTAAATCTGATTGAATTCACAGGCAGCTCGATTCCCGCTATTATTTACA
                      ____________________________________________________________
consensus             ATACCGGCCTCCTAAATCTGATTGAATTCACAGGCAGCTCGATTCCCGCTATTATTTACA
 
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rJMSF038E18+          ACAATCAGGAATTGATTGTGACCACTGCAACATCCGTCTTGCTTTTCATTACGGCATCAT
                      ____________________________________________________________
consensus             ACAATCAGGAATTGATTGTGACCACTGCAACATCCGTCTTGCTTTTCATTACGGCATCAT
 
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rJMSF038E18+          ATTACAGATGATAGAGCCACGTCGCCTTCCCGGGAAAAGGTAGAGTTTTTAAGTTTGGGA
                      ____________________________________________________________
consensus             ATTACAGATGATAGAGCCACGTCGCCTTCCCGGGAAAAGGTAGAGTTTTTAAGTTTGGGA
 
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rJMSF038E18+          AAGAACTGTTTCGGGTGTTGTGGGGGTGGGTGCCAAAGTTTTGAAACTGTCACTCTGCTG
                      ____________________________________________________________
consensus             AAGAACTGTTTCGGGTGTTGTGGGGGTGGGTGCCAAAGTTTTGAAACTGTCACTCTGCTG
 
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rJMSF038E18+          AAATAGTGAATGAGGGTTTGTTCTCTTTTTAGGAGATTCTGAGGATTAATCAATTTTGGG
                      ____________________________________________________________
consensus             AAATAGTGAATGAGGGTTTGTTCTCTTTTTAGGAGATTCTGAGGATTAATCAATTTTGGG
 
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rJMSF038E18+          TTATCATCTTACATATGCCAACATGTTTTTGCATGTGCAATCCCATGTATTTCAACTCAG
                      ____________________________________________________________
consensus             TTATCATCTTACATATGCCAACATGTTTTTGCATGTGCAATCCCATGTATTTCAACTCAG