Contig 002939:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF038C22-                        GAATTTGCTTGTTGTCTCTCTATGAGTTCTCTGCACAGCAACAACAA
JMSF020N15-                        GAATTTGCTTGTTGTCTCTCTATGAGTTCTCTGCACAGCAACAACAA
rJMSF038C22+                       GAATTTGCTTGGTGTCTCTCTATGAGTTCTCTGCACAGCAACAACAA
                      ____________________________________________________________
consensus                          GAATTTGCTTGTTGTCTCTCTATGAGTTCTCTGCACAGCAACAACAA
 
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JMSF038C22-           CAACAATGAGTTCCTCGTCTCGTTTCCATATGTTTCACCCGATTTCACCGTTTCCAGTTG
JMSF020N15-           CAACAATGAGTTCCTCGTCTCGTTTCCATATGTTTCACCCGATTTCACCGTTTCCAGTTG
rJMSF038C22+          CAACAATGAGTTCCTCGTCTCGTTTCCATATGTTTCACCCGATTTCACCGTTTCCAGTTG
                      ____________________________________________________________
consensus             CAACAATGAGTTCCTCGTCTCGTTTCCATATGTTTCACCCGATTTCACCGTTTCCAGTTG
 
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JMSF038C22-           CAAACAAGGTTGATGGGCCGCCGTAGAGTGCCGGAATTTCTGGCAATTTTTTGATTTGTG
JMSF020N15-           CAAACAAGGTTGATGGGCCGCCGTAGAGTGCCGGAATTTCTGGCAATTTTTTGATTTGTG
rJMSF020N15+                            CGCCGTAGAGTGCCGGAATTTCTGGCAATTTTTTGATTTGTG
rJMSF038C22+          CAAACAAGGTTGATGGGCCGCCGTAGAGTGCCGGAATTTCTGGCAATTTTTTGATTTGTG
                      ____________________________________________________________
consensus             CAAACAAGGTTGATGGGCCGCCGTAGAGTGCCGGAATTTCTGGCAATTTTTTGATTTGTG
 
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JMSF038C22-           AGGAGGTGAAGGGAGGAGAAGATGGGGATAAATCTCCAGTTCTTAAAGGGATTGCGACGG
JMSF020N15-           AGGAGGTGAAGGGAGGAGAAGATGGGGATAAATCTCCAGTTCTTAAAGGGATTGCGACGG
rJMSF020N15+          AGGAGGTGAAGGGAGGAGAAGATGGGGATAAATCTCCAGTTCTTAAAGGGATTGCGACGG
rJMSF038C22+          AGGAGGTGAAGGGAGGAGAAGATGGGGATAAATCTCCAGTTCTTAAAGGGATTGCGACGG
                      ____________________________________________________________
consensus             AGGAGGTGAAGGGAGGAGAAGATGGGGATAAATCTCCAGTTCTTAAAGGGATTGCGACGG
 
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JMSF038C22-           GTTGATGACATGCAATCGTTCCACTCGATTTCGCTGTTTCCAGTTGCGAAACAGGTTGAT
JMSF020N15-           GTTGATGACATGCAATCGTTCCACTCGATTTCGCTGTTTCCAGTTGCGAAACAGGTTGAT
rJMSF020N15+          GTTGATGACATGCAATCGTTCCACTCGATTTCGCTGTTTCCAGTTGCGAAACAGGTTGAT
rJMSF038C22+          GTTGATGACATGCAATCGTTCCACTCGATTTCGCTGTTTCCAGTTGCGAAACAGGTTGAT
                      ____________________________________________________________
consensus             GTTGATGACATGCAATCGTTCCACTCGATTTCGCTGTTTCCAGTTGCGAAACAGGTTGAT
 
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JMSF038C22-           GGGCCGCCGCCGTCGCTGTAGAGTGCCGGAATTTCTAGGGTTGTTTCGGTTTGTGAGGAG
JMSF020N15-           GGGCCGCCGCCGTCGCTGTAGAGTGCCGGAATTTCTAGGGTTGTTTCGGTTTGTGAGGAG
rJMSF020N15+          GGGCCGCCGCCGTCGCTGTAGAGTGCCGGAATTTCTAGGGTTGTTTCGGTTTGTGAGGAG
rJMSF038C22+          GGGCCGCCGCCGTCGCTGTAGAGTGCCGGAATTTCTAGGGTTGTTTCGGTTTGTGAGGAG
                      ____________________________________________________________
consensus             GGGCCGCCGCCGTCGCTGTAGAGTGCCGGAATTTCTAGGGTTGTTTCGGTTTGTGAGGAG
 
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JMSF038C22-           GTAAAGGGAGAGGAGATGGGGAGAAATCTCCGATTCTTGAAGGGATTGCGGCGGTGGCGG
JMSF020N15-           GTAAAGGGAGAGGAGATGGGGAGAAATCTCCGATTCTTGAAGGGATTGCGGCGGTGGCGG
rJMSF020N15+          GTAAAGGGAGAGGAGATGGGGAGAAATCTCCGATTCTTGAAGGGATTGCGGCGGTGGCGG
rJMSF038C22+          GTAAAGGGAGAGGAGATGGGGAGAAATCTCCGATTCTTGAAGGGATTGCGGCGGTGGCGG
                      ____________________________________________________________
consensus             GTAAAGGGAGAGGAGATGGGGAGAAATCTCCGATTCTTGAAGGGATTGCGGCGGTGGCGG
 
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JMSF038C22-           GGGAGCGTGTGCTTTTTTGCCGCATCGAGAGTTTGAGGGACGAGGAGAGCGTTAATATAT
JMSF020N15-           GGGAGCGTGTGCTTTTTTGCCGCATCGAGAGTTTGAGGGACGAGGAGAGCGTTAATATAT
rJMSF020N15+          GGGAGCGTGTGCTTTTTTGCCGCATCGAGAGTTTGAGGGACGAGGAGAGCGTTAATATAT
rJMSF038C22+          GGGAGCGTGTGCTTTTTTGCCGCATCGAGAGTTTGAGGGACGAGGAGAGCGTTAATATAT
                      ____________________________________________________________
consensus             GGGAGCGTGTGCTTTTTTGCCGCATCGAGAGTTTGAGGGACGAGGAGAGCGTTAATATAT
 
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JMSF038C22-           AATCCTTCGCCCTTCAGCCCTGCGATTCAGTCGTCTATCTATCTCTCCACCGCCGATTAT
JMSF020N15-           AATCCTTCGCCCTTCAGCCCTGCGATTCAGTCGTCTATCTATCTCTCCACCGCCGATTAT
rJMSF020N15+          AATCCTTCGCCCTTCAGCCCTGCGATTCAGTCGTCTATCTATCTCTCCACCGCCGATTAT
rJMSF038C22+          AATCCTTCGCCCTTCAGCCCTGCGATTCAGTCGTCTATCTATCTCTCCACCGCCGATTAT
                      ____________________________________________________________
consensus             AATCCTTCGCCCTTCAGCCCTGCGATTCAGTCGTCTATCTATCTCTCCACCGCCGATTAT
 
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JMSF038C22-           CCAGTCTCCTCCACTCAGCTCCACCGGCGGCCGACCTTAGTCTTCTCCGTCTGGCGTCTA
JMSF020N15-           CCAGTCTCCTCCACTCAGCTCCACCGGCGGCCGACCTTAGTCTTCTCCGTCTGGCGTCTA
rJMSF020N15+          CCAGTCTCCTCCACTCAGCTCCACCGGCGGCCGACCTTAGTCTTCTCCGTCTGGCGTCTA
rJMSF038C22+          CCAGTCTCCTCCACTCAGCTCCACCGGCGGCCGACCTTAGTCTTCTCCGTCTGGCGTCTA
                      ____________________________________________________________
consensus             CCAGTCTCCTCCACTCAGCTCCACCGGCGGCCGACCTTAGTCTTCTCCGTCTGGCGTCTA
 
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JMSF038C22-           CTACTCTG                                                    
JMSF020N15-           CTACTCTGCTCCATAGCTAATCTTCAAGTGGAAGAGCATTCCGTTTCCCTTCGGCTTTT 
rJMSF020N15+          CTACTCTGCTCCATAGCTAATCTTCAAGTGGAAGAGCATTCCGTTTCCCTTCGGCTTTTT
rJMSF038C22+          CTACTCTGCTCCATAGCTAATCTTCAAGTGGAAGAGCATTCCGTTTCCCTTCGGCTTTTT
                      ____________________________________________________________
consensus             CTACTCTGCTCCATAGCTAATCTTCAAGTGGAAGAGCATTCCGTTTCCCTTCGGCTTTTT
 
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rJMSF020N15+          TGATTTGAGTGTTTGCGGCTGGCATCGAGAGTGTATGTTTTTGCGTTTCTGTATGTCTGT
rJMSF038C22+          TGATTTGAGTGTTTGCGGCTGGCATCGAGAGTGTATGTTTTTGCGTTTCTGTATGTCTGT
                      ____________________________________________________________
consensus             TGATTTGAGTGTTTGCGGCTGGCATCGAGAGTGTATGTTTTTGCGTTTCTGTATGTCTGT
 
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rJMSF020N15+          GCCGTCTGTTTGTATGCACGGGATTGAATTTTGATTGGTATGTGGCTTGGTTGAGGTCGT
rJMSF038C22+          GCCGTCTGTTTGTATGCACGGGATTGAATTTTGATTGGTATGTGGCTTGGTTGAGGTCGT
                      ____________________________________________________________
consensus             GCCGTCTGTTTGTATGCACGGGATTGAATTTTGATTGGTATGTGGCTTGGTTGAGGTCGT
 
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rJMSF020N15+          TTCATGTTTATTGTTTATTGAGGTGGTTTGATTTGAAGTAGTACTAAGGTTCTATATAAG
rJMSF038C22+          TTCATGTTTATTGTTTATTGAGGTGGTTTGATTTGAAGTAGTACTAAGGTTCTATATAAG
                      ____________________________________________________________
consensus             TTCATGTTTATTGTTTATTGAGGTGGTTTGATTTGAAGTAGTACTAAGGTTCTATATAAG
 
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rJMSF020N15+          GTTCTATTGTCAGATGGGTGTAATTAAATAGTCTACCTGGTTGCCATCTTCTTATTGATG
rJMSF038C22+          GTTCTATTGTCAGATGGGTGTAATTAAATAGTCTACCTGGTTGCCATCTTCTTATTGATG
                      ____________________________________________________________
consensus             GTTCTATTGTCAGATGGGTGTAATTAAATAGTCTACCTGGTTGCCATCTTCTTATTGATG