Contig 002938:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025A21Sequence535009340 (3)ref|XP_008241693.1|3e-07PREDICTED: U-box domain-containing protein 5-like isoform X2 [Prunus mume]728002938 (2)ref|XP_008338347.1|2e-46PREDICTED: U-box domain-containing protein 5-like [Malus domestica] ref|XP_00833
JMSF037P05Sequence650009340 (3)emb|CDP02009.1|3e-40unnamed protein product [Coffea canephora]666002938 (2)ref|XP_010095253.1|4e-42U-box domain-containing protein 5 [Morus notabilis] gb|EXB59099.1| U-box domain-

Alignment

This contig is upended


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rJMSF025A21+                             ATCTTAGAGGTGCGAGATTCAGCTTAGAACCGTCAGAAGAG
                      ____________________________________________________________
consensus                                ATCTTAGAGGTGCGAGATTCAGCTTAGAACCGTCAGAAGAG
 
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rJMSF025A21+          GAAGCGGCTAAGGTTGTGAAAGAATTACTTTTTCAGTGCACGAAGAGCGAGCTGGAGTCT
                      ____________________________________________________________
consensus             GAAGCGGCTAAGGTTGTGAAAGAATTACTTTTTCAGTGCACGAAGAGCGAGCTGGAGTCT
 
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rJMSF025A21+          GTTCAGGTTGCGATGTGGAGGCTAAACATTACCTCGCCAAACGCACTCTTGATGGAGAAA
                      ____________________________________________________________
consensus             GTTCAGGTTGCGATGTGGAGGCTAAACATTACCTCGCCAAACGCACTCTTGATGGAGAAA
 
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rJMSF025A21+          CGGTGCATCAAACGCTGCTGGACAACGTTGGTGAAGGCGACGGTCAAAAGAAGAAGATTC
rJMSF037P05+                   AAACGCTGCTGGACAACGTTGGTGAAGGCGACGGTCAAAAGAAGAAGATTC
                      ____________________________________________________________
consensus             CGGTGCATCAAACGCTGCTGGACAACGTTGGTGAAGGCGACGGTCAAAAGAAGAAGATTC
 
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rJMSF025A21+          TGTTGTTCTTGCTGGATCTTCTGAGCAAGTACGGGAAAGCAATCGTGGAACAGAACACCG
rJMSF037P05+          TGTTGTTCTTGCTGGATCTTCTGAGCAAGTACGGGAAAGCAATCGTGGAACAGAACACCG
                      ____________________________________________________________
consensus             TGTTGTTCTTGCTGGATCTTCTGAGCAAGTACGGGAAAGCAATCGTGGAACAGAACACCG
 
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rJMSF025A21+          AGAATGGCTACAATAATCTGCAGCGCGATCATCTTTTTCCTGCCCGGGCCAACATATTGA
rJMSF037P05+          AGAATGGCTACAATAATCTGCAGCGCGATCATCTTTTTCCTGCCCGGGCCAACATATTGA
                      ____________________________________________________________
consensus             AGAATGGCTACAATAATCTGCAGCGCGATCATCTTTTTCCTGCCCGGGCCAACATATTGA
 
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rJMSF025A21+          ACAGACCGATCCCCCCTGATGTGTTCAAATGCCCCATATCTTCGAGGCTGATGTACGATC
rJMSF037P05+          ACAGACCGATCCCCCCTGATGTGTTCAAATGCCCCATATCTTCGAGGCTGATGTACGATC
                      ____________________________________________________________
consensus             ACAGACCGATCCCCCCTGATGTGTTCAAATGCCCCATATCTTCGAGGCTGATGTACGATC
 
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rJMSF025A21+          CTGTCGTGATTGCTTCCGGGGAAACGTTCGAGAGGATGTGGATTCAAAGGTGGTTCGACG
rJMSF037P05+          CTGTCGTGATTGCTTCCGGGGAAACGTTCGAGAGGATGTGGATTCAAAGGTGGTTCGACG
                      ____________________________________________________________
consensus             CTGTCGTGATTGCTTCCGGGGAAACGTTCGAGAGGATGTGGATTCAAAGGTGGTTCGACG
 
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rJMSF025A21+          CAGGCCACAACACGTGTCCAAAGACCGGGGAGACGCTTCCCGACTTGACAATAACACCAA
rJMSF037P05+          CAGGCCACAACACGTGTCCAAAGACCGGGGAGACGCTTCCCGACTTGACAATAACACCAA
                      ____________________________________________________________
consensus             CAGGCCACAACACGTGTCCAAAGACCGGGGAGACGCTTCCCGACTTGACAATAACACCAA
 
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rJMSF025A21+          ACAACCTGTTGAAGGGTCTGATATTGAAGTGGTGTGCAGAACAGGGAGTTGCTTGTTCTG
rJMSF037P05+          ACAACCTGTTGAAGGGTCTGATATTGAAGTGGTGTGCAGAACAGGGAGTTGCTTGTTCTG
                      ____________________________________________________________
consensus             ACAACCTGTTGAAGGGTCTGATATTGAAGTGGTGTGCAGAACAGGGAGTTGCTTGTTCTG
 
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rJMSF025A21+          ATCCTACCACCTGTATATATGATGCAGTTCCTCATTCATGGGAAGCTTCATCTGCTTCCA
rJMSF037P05+          ATCCTACCACCTGTATATATGATGCAGTTCCTCATTCATGGGAAGCTTCATCTGCTTCCA
                      ____________________________________________________________
consensus             ATCCTACCACCTGTATATATGATGCAGTTCCTCATTCATGGGAAGCTTCATCTGCTTCCA
 
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rJMSF025A21+          TTGCAAGCCTGAACAGTTATATGGATGGTCTGTCACTTCCCATAGGTTTTAACAATTTGT
rJMSF037P05+          TTGCAAGCCTGAACAGTTATATGGATGGTCTGTCACTTCCCATAGGTTTTAACAATTTGT
                      ____________________________________________________________
consensus             TTGCAAGCCTGAACAGTTATATGGATGGTCTGTCACTTCCCATAGGTTTTAACAATTTGT
 
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rJMSF025A21+          CAATTGTTAC                                                  
rJMSF037P05+          CAATTGTTACAGAGGACCATAGTTGACACCCTTTTGGAGCATTAGAATAGAATTGTGTTA
                      ____________________________________________________________
consensus             CAATTGTTACAGAGGACCATAGTTGACACCCTTTTGGAGCATTAGAATAGAATTGTGTTA
 
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rJMSF037P05+          AGTGTTTTAGAGTTTTTTTTGCCAATGACCTCATGGTCAAAACGATCTAAGGTCACAAGT
                      ____________________________________________________________
consensus             AGTGTTTTAGAGTTTTTTTTGCCAATGACCTCATGGTCAAAACGATCTAAGGTCACAAGT