| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF036K05 | Sequence | 664 | 002930 (4) | ref|XP_006341596.1| | 1e-44 | PREDICTED: 60S ribosomal protein L14, mitochondrial-like isoform X1 [Solanum tu | 672 | 002930 (4) | ref|XP_006341596.1| | 5e-83 | PREDICTED: 60S ribosomal protein L14, mitochondrial-like isoform X1 [Solanum tu |
| JMSF042G18 | Sequence | 768 | 002930 (4) | ref|XP_006341596.1| | 6e-71 | PREDICTED: 60S ribosomal protein L14, mitochondrial-like isoform X1 [Solanum tu | 726 | 002930 (4) | ref|XP_006341596.1| | 2e-83 | PREDICTED: 60S ribosomal protein L14, mitochondrial-like isoform X1 [Solanum tu |
This contig is upended
. : . : . : . : . : . :
JMSF036K05- GGCCCCAGTCCCCATCTGCCATCTGCGCTCTCCCGCTTCTCCGTT
JMSF042G18- GATTTTCCCTGGCCCCAGTCCCCATCTGCCATCTGCGCTCTCCCGTTTCTCCGTT
____________________________________________________________
consensus GATTTTCCCTGGCCCCAGTCCCCATCTGCCATCTGCGCTCTCCCGTTTCTCCGTT
. : . : . : . : . : . :
JMSF036K05- CTCAGTACCTCAGCCGACTCTCATCCCTCACCGCTCCGGCACCATCCCAGACTCCCTCTG
JMSF042G18- CTCAGTACCTCAGCCGACTCTCATCCCTCACCGCTCCGGCACCATCCCAGACTCCCTCTG
____________________________________________________________
consensus CTCAGTACCTCAGCCGACTCTCATCCCTCACCGCTCCGGCACCATCCCAGACTCCCTCTG
. : . : . : . : . : . :
JMSF036K05- CAGTCTGCGGCTCTGCCTCTCTGCCGTCTCTGACTCTCTACCTCTCTGGAGTCTGATCGT
JMSF042G18- CAGTCTGCGGCTCTGCCTCTCTGCCGTCTCTGACTCTCTACCTCTCTGGAGTCTGATCGT
____________________________________________________________
consensus CAGTCTGCGGCTCTGCCTCTCTGCCGTCTCTGACTCTCTACCTCTCTGGAGTCTGATCGT
. : . : . : . : . : . :
JMSF036K05- CTGCCTCTCTGCTGTCGCTGTATCGAGCTCCAGCTCATCATTGCTCAACCCTTCGCCGGC
JMSF042G18- CTGCCTCTCTGCTGTCGCTGTATCGAGCTCCAGCTCATCATTGCTCAACCCTTCGCCGGC
____________________________________________________________
consensus CTGCCTCTCTGCTGTCGCTGTATCGAGCTCCAGCTCATCATTGCTCAACCCTTCGCCGGC
. : . : . : . : . : . :
JMSF036K05- TGATTTTCTCCCATTGACGGCTCCACATAATTAGCTCACTCACGAAAGATAAGGACTTCC
JMSF042G18- TGATTTTCTCCCATTGACGGCTCCACATAATTAGCTCACTCACGAAAGATAAGGACTTCC
rJMSF042G18+ TCCCATTGACGGCTCCACATAATTAGCTCACTCACGAAAGATAAGGACTTCC
____________________________________________________________
consensus TGATTTTCTCCCATTGACGGCTCCACATAATTAGCTCACTCACGAAAGATAAGGACTTCC
. : . : . : . : . : . :
JMSF036K05- ATAAATTTGTTGTGTGAATTTGTAACCAGTGATGGCTGCATCTTCTTCTCGGTTGCTCCG
JMSF042G18- ATAAATTTGTTGTGTGAATTTGTAACCAGTGATGGCTGCATCTTCTTCTCGGTTGCTCCG
rJMSF042G18+ ATAAATTTGTTGTGTGAATTTGTAACCAGTGATGGCTGCATCTTCTTCTCGGTTGCTCCG
rJMSF036K05+ CTCGGTTGCTCCG
____________________________________________________________
consensus ATAAATTTGTTGTGTGAATTTGTAACCAGTGATGGCTGCATCTTCTTCTCGGTTGCTCCG
. : . : . : . : . : . :
JMSF036K05- TGGTTGTTCTTTATTGGGTGGCCTTTGTAACAACTCTGCCTTGTTCACGAGAGCATCACC
JMSF042G18- TGGTTGTTCTTTATTGGGTGGCCTTTGTAACAACTCTGCCTTGTTCACGAGAGCATCACC
rJMSF042G18+ TGGTTGTTCTTTATTGGGTGGCCTTTGTAACAACTCTGCCTTGTTCACGAGAGCATCACC
rJMSF036K05+ TGGTTGTTCTTTATTGGGTGNCCTTTGTAACAACTCTGCCTTGTTCACGAGAGCATCACC
____________________________________________________________
consensus TGGTTGTTCTTTATTGGGTGGCCTTTGTAACAACTCTGCCTTGTTCACGAGAGCATCACC
. : . : . : . : . : . :
JMSF036K05- TGAGATTATATCCAACGATTTATCCACACAGCAACTAAGAACGTTTATACAAATGAGGAC
JMSF042G18- TGAGATTATATCCAACGATTTATTCACACAGCAACTAAGAACGTTTATACAAATGAGGAC
rJMSF042G18+ TGAGATTATATCCAACGATTTATTCACACAGCAACTAAGAACGTTTATACAAATGAGGAC
rJMSF036K05+ TGAGATTATATCCAACGATTTATCCACACAGCAACTAAGAACGTTTATACAAATGAGGAC
____________________________________________________________
consensus TGAGATTATATCCAACGATTTATTCACACAGCAACTAAGAACGTTTATACAAATGAGGAC
. : . : . : . : . : . :
JMSF036K05- CAACCTGAAAGTGGTAGACAATTCGGGTGCGAAAAGAGTTATGTGCATACAAGCATTGAA
JMSF042G18- CAACCTGAAAGTGGTAGACAATTCGGGTGCGAAAAGAGTTATGTGCATACAAGCATTGAA
rJMSF042G18+ CAACCTGAAAGTGGTAGACAATTCGGGTGCGAAAAGAGTTATGTGCATACAAGCATTGAA
rJMSF036K05+ CAACCTGAAAGTGGTAGACAATTCGGGTGCGAAAAGAGTTATGTGCATACAAGCATTGAA
____________________________________________________________
consensus CAACCTGAAAGTGGTAGACAATTCGGGTGCGAAAAGAGTTATGTGCATACAAGCATTGAA
. : . : . : . : . : . :
JMSF036K05- GGGCAAGAAAGGAGCAAGGCTGGGGGATACAATAGTTTGCTCGGTAAAGGAAGCGCAGCC
JMSF042G18- GGGCAAGAAAGGAGCAAGGCTGGGGGATACAATAGTTTGCTCGGTAAAGGAAGCGCAGCC
rJMSF042G18+ GGGCAAGAAAGGAGCAAGGCTGGGGGATACAATAGTTTGCTCGGTAAAGGAAGCGCAGCC
rJMSF036K05+ GGGCAAGAAAGGAGCAAGGCTGGGGGATACAATAGTTTGCTCGGTAAAGGAAGCGCAGCC
____________________________________________________________
consensus GGGCAAGAAAGGAGCAAGGCTGGGGGATACAATAGTTTGCTCGGTAAAGGAAGCGCAGCC
. : . : . : . : . : . :
JMSF036K05- AGGTGGGAAAGTGAAGAAAGGAGAGGTTCACTACGGCGTAGTTGTTCGGGCTGCAATGCC
JMSF042G18- AGGTGGGAAAGTGAAGAAAGGAGAGGTTCACTACGGCGTAGTTGTTCGGGCTGCAATGCC
rJMSF042G18+ AGGTGGGAAAGTGAAGAAAGGAGAGGTTCACTACGGCGTAGTTGTTCGGGCTGCAATGCC
rJMSF036K05+ AGGTGGGAAAGTGAAGAAAGGAGAGGTTCACTACGGCGTAGTTGTTCGGGCTGCAATGCC
____________________________________________________________
consensus AGGTGGGAAAGTGAAGAAAGGAGAGGTTCACTACGGCGTAGTTGTTCGGGCTGCAATGCC
. : . : . : . : . : . :
JMSF036K05- AAGGGGCCGGTGTGATGG
JMSF042G18- AAGGGGCCGGTGTGATGGGAGCGAAGTGAAGTTTGACGACAACGCTGTGGTGCTTATCAA
rJMSF042G18+ AAGGGGCCGGTGTGATGGGAGCGAAGTGAAGTTTGACGACAACGCTGTGGTGCTTATCAA
rJMSF036K05+ AAGGGGCCGGTGTGATGGGAGCGAAGTGAAGTTTGACGACAACGCTGTGGTGCTTATCAA
____________________________________________________________
consensus AAGGGGCCGGTGTGATGGGAGCGAAGTGAAGTTTGACGACAACGCTGTGGTGCTTATCAA
. : . : . : . : . : . :
JMSF042G18- CAAGCACGGAGAGCCAATCGGTACCAGAGTTTTCGGCCCCGTTCCCCACGAGC
rJMSF042G18+ CAAGCACGGAGAGCCAATCGGTACCAGAGTTTTCGGCCCCGTTCCCCACGAGCTTAGGAA
rJMSF036K05+ CAAGCACGGAGAGCCAATCGGTACCAGAGTTTTCGGCCCCGTTCCCCACGAGCTTAGGAA
____________________________________________________________
consensus CAAGCACGGAGAGCCAATCGGTACCAGAGTTTTCGGCCCCGTTCCCCACGAGCTTAGGAA
. : . : . : . : . : . :
rJMSF042G18+ AAAGAAGCACATCAAGATTCTGAGCCTCGCGGAGCACATTGCCTGAGGTAATAGATACTC
rJMSF036K05+ AAAGAAGCACATCAAGGTTCTGAGCCTCGCGGAGCACATTGCCTGAGGTAATAGATACTC
____________________________________________________________
consensus AAAGAAGCACATCAAGGTTCTGAGCCTCGCGGAGCACATTGCCTGAGGTAATAGATACTC
. : . : . : . : . : . :
rJMSF042G18+ TTCCTGTGCTGTGCTACTTTGGAATAGGTCTTAGCACAAGCTAGTCTTGTTTTTGCTAGG
rJMSF036K05+ TTCCTGTGCTGTGCTACTTTGGAATAGGTCTTAGTACAAGCTAGTCTTGTTTTTGCTAGG
____________________________________________________________
consensus TTCCTGTGCTGTGCTACTTTGGAATAGGTCTTAGTACAAGCTAGTCTTGTTTTTGCTAGG
. : . : . : . : . : . :
rJMSF042G18+ GTCTGGGATTGAATAGGTACATTATTTTACCCATGTTACCAGGATACCAGTGGACCAGGA
rJMSF036K05+ GTCTGGGATTGAATAGGTACATTATTTTACCCATGTTACCAGGATA-CAGTGGACCAGGA
____________________________________________________________
consensus GTCTGGGATTGAATAGGTACATTATTTTACCCATGTTACCAGGATACCAGTGGACCAGGA
. : . : . : . : . : . :
rJMSF042G18+ TTTACATATTAAGA
rJMSF036K05+ TTTACATATTAAGATGGATTCTTAATAGAAGTTTATTTTTAGTGTACTACATGTTCATTT
____________________________________________________________
consensus TTTACATATTAAGATGGATTCTTAATAGAAGTTTATTTTTAGTGTACTACATGTTCATTT