Contig 002921:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034H21Sequence714002921 (2)ref|NP_001275134.1|5e-117mitochondrial outer membrane protein porin of 36 kDa [Solanum tuberosum] sp|P42379002921 (2)gb|KDO82796.1|2e-34hypothetical protein CISIN_1g0238542mg, partial [Citrus sinensis] gb|KDO82797.1|

Alignment

This contig is upended


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JMSF034H21-                                                               GACGCTCC
                      ____________________________________________________________
consensus                                                                 GACGCTCC
 
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JMSF034H21-           TCCGGAACTACAACTGAAAATCAAAACCCCTTTTGGCCTTCGTTCCCTTCTCTACAAGCT
                      ____________________________________________________________
consensus             TCCGGAACTACAACTGAAAATCAAAACCCCTTTTGGCCTTCGTTCCCTTCTCTACAAGCT
 
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JMSF034H21-           CCGGTGCAACCAACGGTGGAAATGGTGAAAGGCCCCGGTCTTTACTCCGACATCGGCAAA
                      ____________________________________________________________
consensus             CCGGTGCAACCAACGGTGGAAATGGTGAAAGGCCCCGGTCTTTACTCCGACATCGGCAAA
 
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JMSF034H21-           AAGGCCAGAGATCTTCTCTACAAGGACTACGTGGCCGATCACAAGTTCACCGTCACTACT
                      ____________________________________________________________
consensus             AAGGCCAGAGATCTTCTCTACAAGGACTACGTGGCCGATCACAAGTTCACCGTCACTACT
 
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JMSF034H21-           TGCAACTCCAATGGAGTGGCTGTTACTTCATCTGGTGTTAAGAAAGGTGAGTTATATTTA
                      ____________________________________________________________
consensus             TGCAACTCCAATGGAGTGGCTGTTACTTCATCTGGTGTTAAGAAAGGTGAGTTATATTTA
 
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JMSF034H21-           GGCGATGTTAGCACCCAGCTAAAGAACAAGAATATCGTAACTGATGTTAAAGTGGACACC
                      ____________________________________________________________
consensus             GGCGATGTTAGCACCCAGCTAAAGAACAAGAATATCGTAACTGATGTTAAAGTGGACACC
 
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JMSF034H21-           AGCTCTAATATTTACACAACTATCACTGTTGATGAACCTGCCCCTGGACTGAAGACAGTC
                      ____________________________________________________________
consensus             AGCTCTAATATTTACACAACTATCACTGTTGATGAACCTGCCCCTGGACTGAAGACAGTC
 
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JMSF034H21-           CTTAGCTTTATTGTTCCAGACCAGAGATCTGGCAAGGTAGAGATCCAATACTTGAATGAG
                      ____________________________________________________________
consensus             CTTAGCTTTATTGTTCCAGACCAGAGATCTGGCAAGGTAGAGATCCAATACTTGAATGAG
 
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JMSF034H21-           TATGTAGGGATCAGTACTAGCATTGGACTCACTGCAAGTCCACTTGTCAATTTCTCTGGT
                      ____________________________________________________________
consensus             TATGTAGGGATCAGTACTAGCATTGGACTCACTGCAAGTCCACTTGTCAATTTCTCTGGT
 
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JMSF034H21-           GTTGTTGGAAACAACTCTCTTGCTCTGGGATCGGATCTCTCATTTAACACTGCAACTGGG
                      ____________________________________________________________
consensus             GTTGTTGGAAACAACTCTCTTGCTCTGGGATCGGATCTCTCATTTAACACTGCAACTGGG
 
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JMSF034H21-           AATTTCATCAAATGCGATGCTGGCATGAGTTTCTCCTCCTCTGATTTAATAGCTTCTTTA
                      ____________________________________________________________
consensus             AATTTCATCAAATGCGATGCTGGCATGAGTTTCTCCTCCTCTGATTTAATAGCTTCTTTA
 
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JMSF034H21-           ACATTGAATAGTGGAGACACCCTTACAGCTTCCTACTACCACTCAGTGAACCCATTGACA
rJMSF034H21+                                                   CTCAGTGAACCCNTTGACA
                      ____________________________________________________________
consensus             ACATTGAATAGTGGAGACACCCTTACAGCTTCCTACTACCACTCAGTGAACCCATTGACA
 
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JMSF034H21-           AATACAGCTGCTGGTGCAGAGTTTACTCACAACTTCTCAGGTGATG              
rJMSF034H21+          AATACAGCTGNTGGTGCAGAGTTTACTCACAACTTNTCAAGTGATGAGAATACTCTAACC
                      ____________________________________________________________
consensus             AATACAGCTGCTGGTGCAGAGTTTACTCACAACTTCTCAGGTGATGAGAATACTCTAACC
 
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rJMSF034H21+          NTTGGGACACAGCNCTCGCTAGACCCATTGNCAACAGTGAAGGNTAAGGTTAACAACAAA
                      ____________________________________________________________
consensus             NTTGGGACACAGCNCTCGCTAGACCCATTGNCAACAGTGAAGGNTAAGGTTAACAACAAA
 
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rJMSF034H21+          TGCATAGCAACTGCTNTCATCCAACNCCAGTGGCGCCCAAGATCAGTNTTCACCATCNCT
                      ____________________________________________________________
consensus             TGCATAGCAACTGCTNTCATCCAACNCCAGTGGCGCCCAAGATCAGTNTTCACCATCNCT
 
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rJMSF034H21+          GGTGAAGTGGATACTAAGGCAGTTGAGAAGAGTCCCAAGATTGGATTGGCTGTAGCGGTC
                      ____________________________________________________________
consensus             GGTGAAGTGGATACTAAGGCAGTTGAGAAGAGTCCCAAGATTGGATTGGCTGTAGCGGTC
 
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rJMSF034H21+          AAGCCCTGATCTAGGTACAGCCNGTACAACTTTGCAGCTNGTCGAAAGCGAGTGGCCNGC
                      ____________________________________________________________
consensus             AAGCCCTGATCTAGGTACAGCCNGTACAACTTTGCAGCTNGTCGAAAGCGAGTGGCCNGC
 
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rJMSF034H21+          CTTGTTTCTTTGGNGAAGNTGCTATAAGGTACTTAGAACTCTTACTAAATCATCTATCCA
                      ____________________________________________________________
consensus             CTTGTTTCTTTGGNGAAGNTGCTATAAGGTACTTAGAACTCTTACTAAATCATCTATCCA