clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF011H22 | Sequence | 532 | 016261 | 768 | 002918 (4) | ref|XP_009796072.1| | 3e-65 | PREDICTED: intracellular protein transport protein USO1 [Nicotiana sylvestris] | |||
JMSF010I13 | Sequence | 435 | 009230 (3) | 662 | 002918 (4) | ref|XP_009796072.1| | 3e-46 | PREDICTED: intracellular protein transport protein USO1 [Nicotiana sylvestris] | |||
JMSF032C02 | Sequence | 646 | 009230 (3) | ref|XP_004294722.1| | 2e-09 | PREDICTED: protein NETWORKED 4A isoform X1 [Fragaria vesca subsp. vesca] | 724 | 002918 (4) | ref|XP_009796072.1| | 8e-50 | PREDICTED: intracellular protein transport protein USO1 [Nicotiana sylvestris] |
JMSF034A21 | Sequence | 646 | 018967 | ref|XP_009796072.1| | 1e-41 | PREDICTED: intracellular protein transport protein USO1 [Nicotiana sylvestris] | 631 | 002918 (4) | ref|XP_011080649.1| | 2e-33 | PREDICTED: myosin-9-like isoform X2 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMFF011H22+ GCAGGATAACGTCAAAGAAATGGATGTACGCTGCCAA
____________________________________________________________
consensus GCAGGATAACGTCAAAGAAATGGATGTACGCTGCCAA
. : . : . : . : . : . :
rJMFF011H22+ TGTTTAGAGGACGAGGCGAGACGAGTCTTAGCTGGAAAATCAGAAATGGAAGCATTGCTT
____________________________________________________________
consensus TGTTTAGAGGACGAGGCGAGACGAGTCTTAGCTGGAAAATCAGAAATGGAAGCATTGCTT
. : . : . : . : . : . :
rJMSF010I13+ GGATCCGAGATTGAGCTGTTNAAAAATAAGCATCTCAGAGAGCAATGATCGCGNGGAAGA
rJMFF011H22+ GGATCCGAGATTGAGCTGTT-AAAAATAAGCATCTCAGAGAGCAATGATCGCGTGGAAGA
rJMSF032C02+ GGATCCGAGATTGAGCTGTT-AAAAATAAGCATCTCAGAGAGCAATGATCGCGTGGAAGA
____________________________________________________________
consensus GGATCCGAGATTGAGCTGTT-AAAAATAAGCATCTCAGAGAGCAATGATCGCGTGGAAGA
. : . : . : . : . : . :
rJMSF010I13+ ATTGAATCGATGCATCGAAGAACTGAAATCAAAGAACGAGTTGCTGACTGCCGAAAAGGA
rJMFF011H22+ ATTGAATCGATGCATCGAAGAACTGAAATCAAAGAACGAGTTGCTGACTGCCGAAAAGGA
rJMSF032C02+ ATTGAATCGATGCATCGAAGAACTGAAATCAAAGAACGAGTTGCTGACTGCCGAAAAGGA
____________________________________________________________
consensus ATTGAATCGATGCATCGAAGAACTGAAATCAAAGAACGAGTTGCTGACTGCCGAAAAGGA
. : . : . : . : . : . :
rJMSF010I13+ CGAGCTTAATGCGAGAGTTGTCGCACTTTCTGCCGACCTAGATTCTAGAGACGACCGCAT
rJMFF011H22+ CGAGCTTAATGCGAGAGTTGTCGCACTTTCTGCCGACCTAGATTCTAGAGACGACCGCAT
rJMSF032C02+ CGAGCTTAATGCGAGAGTTGTCGCACTTTCTGCCGACCTAGATTCTAGAGACGACCGCAT
rJMSF034A21+ CTGCCGACCTAGATTCTAGAGACGACCGCAT
____________________________________________________________
consensus CGAGCTTAATGCGAGAGTTGTCGCACTTTCTGCCGACCTAGATTCTAGAGACGACCGCAT
. : . : . : . : . : . :
rJMSF010I13+ CCATGAAACGAACAGGCATATGCATCAACTGCATATGGAGCACGTTCAGTTGCTCGCTGA
rJMFF011H22+ CCATGAAACGAACAGGCATATGCATCAACTGCATATGGAGCACGTTCAGTTGCTCGCTGA
rJMSF032C02+ CCATGAAACGAACAGGCATATGCATCAACTGCATATGGAGCACGTTCAGTTGCTCGCTGA
rJMSF034A21+ CCATGAAACGAACAGGCATATGCATCAACTGCATATGGAGCACGTTCAGTTGCTCGCTGA
____________________________________________________________
consensus CCATGAAACGAACAGGCATATGCATCAACTGCATATGGAGCACGTTCAGTTGCTCGCTGA
. : . : . : . : . : . :
rJMSF010I13+ AAACGACGGGGCACGCAAACTGGTGGAGGAGCTGAGATCAACGGTTAAAGATCTCGAGAC
rJMFF011H22+ AAACGACGGGGCACGCAAACTGGTGGAGGAGCTGAGATCAACGGTTAAAGATCTCGAGAC
rJMSF032C02+ AAACGACGGGGCACGCAAACTGGTGGAGGAGCTGAGATCAACGGTTAAAGATCTCGAGAC
rJMSF034A21+ AAACGACGGGGCACGCAAACTGGTGGAGGAGCTGAGATCAACGGTTAAAGATCTCGAGAC
____________________________________________________________
consensus AAACGACGGGGCACGCAAACTGGTGGAGGAGCTGAGATCAACGGTTAAAGATCTCGAGAC
. : . : . : . : . : . :
rJMSF010I13+ CGACATAAGGAGACAACATGAACTGATCGAGGAAGGCGCAGAGGAGAAACGGGAGGCCAT
rJMFF011H22+ CGACATAAGGAGACAACATGAACTGATCGAGGAAGGCGCAGAGGAGAAACGGGAGGCCAT
rJMSF032C02+ CGACATAAGGAGACAACATGAACTGATCGAGGAAGGCGCAGAGGAGAAACGGGAGGCCAT
rJMSF034A21+ CGACATAAGGAGACAACATGAACTGATCGAGGAAGGCGCAGAGGAGAAACGGGAGGCCAT
____________________________________________________________
consensus CGACATAAGGAGACAACATGAACTGATCGAGGAAGGCGCAGAGGAGAAACGGGAGGCCAT
. : . : . : . : . : . :
rJMSF010I13+ CCGGCAGCTGTGTTTCTCGCTGGAGCACTACAGGAACGGCTACCATCGCCTTCGAGAAGT
rJMFF011H22+ CCGGCAGCTGTGTTTCTCGCTGGAGCACTACAGGAACGGCTACCATCGCCTTCGAGAAGT
rJMSF032C02+ CCGGCAGCTGTGTTTCTCGCTGGAGCACTACAGGAACGGCTACCATCGCCTTCGAGAAGT
rJMSF034A21+ CCGGCAGCTGTGTTTCTCGCTGGAGCACTACAGGAACGGCTACCATCGCCTTCGAGAAGT
____________________________________________________________
consensus CCGGCAGCTGTGTTTCTCGCTGGAGCACTACAGGAACGGCTACCATCGCCTTCGAGAAGT
. : . : . : . : . : . :
rJMSF010I13+ TGTCATGGGCAACAAGAGGGTACCTGTAATGGCATCCTGAATCATTGGCAAAAAAGCACA
rJMFF011H22+ TGTCATGGGCAACAAGAGGGTACCTGTAATGGCATCCTGAATCATTGGCAAAAAAGCACA
rJMSF032C02+ TGTCATGGGCAACAAGAGGGTACCTGTAATGGCATCCTGAATCATTGGCAAAAAAGCACA
rJMSF034A21+ TGTCATGGGCAACAAGAGGGTACCTGTAANGGCATCCTGAATCATTGGCAAAAAAGCACA
____________________________________________________________
consensus TGTCATGGGCAACAAGAGGGTACCTGTAATGGCATCCTGAATCATTGGCAAAAAAGCACA
. : . : . : . : . : . :
rJMSF010I13+ TCCCAGTCACCTCTTCCATCTTTCCTTCTCTCTCTTTCCCTTTCCAAATTTTTTGTATTT
rJMFF011H22+ TCCCAGTCACCTCTTCCATCTTTCCTTCTCTCTCTTTCCCTTTCCAAATTTTTTGTATTT
rJMSF032C02+ TCCCAGTCACCTCTTCCATCTTTCCTTCTCTCTCTTTCCCTTTCCAAATTTTTTGTATTT
rJMSF034A21+ TCCCAGTCACCTCTTCCATCTTTCCTTCTCTCTCTTTCCCTTTCCAAATTTTTTGTATTT
____________________________________________________________
consensus TCCCAGTCACCTCTTCCATCTTTCCTTCTCTCTCTTTCCCTTTCCAAATTTTTTGTATTT
. : . : . : . : . : . :
rJMSF010I13+ TGACTGTTTTCAGTCCCATGTATTTTGTCAAGACTGTCATGTTTTCTTCTATTTTTTTGG
rJMFF011H22+ TGACTGTTTTCAGTCCCATGTATTTTGTCAAGACTGTCATGTTTTCTTCTATTTTTTTGG
rJMSF032C02+ TGACTGTTTTCAGTCCCATGTATTTTGTCAAGACTGTCATGTTTTCTTCTATTTTTTTGG
rJMSF034A21+ TGACTGTTTTCAGTCCCATGTATTTTGTCAAGACNGTCATGTTTTCTTNTATTTTTTTGG
____________________________________________________________
consensus TGACTGTTTTCAGTCCCATGTATTTTGTCAAGACTGTCATGTTTTCTTCTATTTTTTTGG
. : . : . : . : . : . :
rJMSF010I13+ GACTTCCATACTATAAGTATACGTTCTGGTGCAACTTCAAGTT
rJMFF011H22+ GACTTCCATACTATAAGTATACGTTCTGGTGCAACTTCAAGTTTGGATTTGAAGTTGGTC
rJMSF032C02+ GACTTCCATACTATAAGTATACGTTCTGGTGCAACTTCAAGTTTGGATTTGAAGTTGGTC
rJMSF034A21+ GACTTCCATACTATAAGTATACGTTCTGGTGCAACTTCAAGTTTGGATTTGAAGNTGGTC
____________________________________________________________
consensus GACTTCCATACTATAAGTATACGTTCTGGTGCAACTTCAAGTTTGGATTTGAAGTTGGTC
. : . : . : . : . : . :
rJMFF011H22+ GAGTATAAGTGC
rJMSF032C02+ GAGTATAAGTGCTTTATAAACTTGTATTCTTCGATTGAGCCTTGTTACTATT
rJMSF034A21+ GAGTATAAGTGCTTTATAAACTTGTATTCTTCGATTGAGCCTTGTTACTATTTGGGTTTA
____________________________________________________________
consensus GAGTATAAGTGCTTTATAAACTTGTATTCTTCGATTGAGCCTTGTTACTATTTGGGTTTA
. : . : . : . : . : . :
rJMSF034A21+ TCCTTTTCCCCCTTTTTGGTAGGAAGTACTTTTCCCTTTTAAGGNGCAGTTTCAGCATAT
____________________________________________________________
consensus TCCTTTTCCCCCTTTTTGGTAGGAAGTACTTTTCCCTTTTAAGGNGCAGTTTCAGCATAT