Contig 002917:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-                                     GGGAAGTCATAACGTGGAGCATATCCATTCTCGG
JMSF050L07-                                     GGGAAGTCATAACGTGGAGCATATCCATTCTCGG
                      ____________________________________________________________
consensus                                       GGGAAGTCATAACGTGGAGCATATCCATTCTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           AGGAGCAAATGGGAACGGCGAAGCAGCTAGTATCCGTAGGCCTATCGCTGCCAATTCCGC
JMSF050L07-           AGGAGCAAATGGGAACGGCGAAGCAGCTAGTATCCGTAGGCCTATCGCTGCCAATTCCGC
                      ____________________________________________________________
consensus             AGGAGCAAATGGGAACGGCGAAGCAGCTAGTATCCGTAGGCCTATCGCTGCCAATTCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           AGTCTCCGGTGGCCGGAAAACGCAACAGTCGCCTGAATTTTGTGCGGTTAACTTTACAAA
JMSF050L07-           AGTCTCCGGTGGCCGGAAAACGCAACAGTCGCCTGAATTTTGTGCGGTTAACTTTACAAA
rJMSF050L07+                                                               TTACAAA
                      ____________________________________________________________
consensus             AGTCTCCGGTGGCCGGAAAACGCAACAGTCGCCTGAATTTTGTGCGGTTAACTTTACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           GTACTGCAATCAGGGCGTCGCTGTCAATAGATGAAATTCCACCAAATGCCCTAAGGCAGG
JMSF050L07-           GTACTGCAATCAGGGCGTCGCTGTCAATAGATGAAATTCCACCAAATGCCCTAAGGCAGG
rJMSF050L07+          GTACTGCCATCAGGGCGTCGCTGTCAATAGATGAAATTCCACCAAATGCCCTAAGGCAGG
                      ____________________________________________________________
consensus             GTACTGCAATCAGGGCGTCGCTGTCAATAGATGAAATTCCACCAAATGCCCTAAGGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           CAAGAGAATCGGGCTTGAGCAGCTGTGGCTTCAGCCTTGGCGTCGACTTGGGATTAAGTC
JMSF050L07-           CAAGAGAATCGGGCTTGAGCAGCTGTGGCTTCAGCCTTGGCGTCGACTTGGGATTAAGTC
rJMSF050L07+          CAAGAGANTCGGGCTTGAGCAGCTGTGGCTTCAGCCTTGGCGTCGACTTGGGATTAAGTC
rJMSF033I14+                                                  CGTCGACTTGGGATTAAGTC
                      ____________________________________________________________
consensus             CAAGAGAATCGGGCTTGAGCAGCTGTGGCTTCAGCCTTGGCGTCGACTTGGGATTAAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           GCACTGGCCTTGCTCTTAGCAAAGGCTTCTCTTTTCGTCCATTAACGGTTCTGGAATTGA
JMSF050L07-           GCACTGGCCTTGCTCTTAGCAAAGGCTTCTCTTTTCGTCCATTAACGGTTCTGGAATTGA
rJMSF050L07+          GCACTGGCCTTGCTCTTAGCAAAGGCTTCTCTTTTCGTCCATTAACGGTTCTGGAATTGA
rJMSF033I14+          GCACTGGCCTTGCTCTTAGCAAAGGCTTCTCTTTTCGTCCATTAACGGTTCTGGAATTGA
                      ____________________________________________________________
consensus             GCACTGGCCTTGCTCTTAGCAAAGGCTTCTCTTTTCGTCCATTAACGGTTCTGGAATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           GAGGGCAGAAGCTAGAAGTTCGACTTATTGATATTGCTCAAAAACAGGAGGTTGATGAAT
JMSF050L07-           GAGGGCAGAAGCTAGAAGTTCGACTTATTGATATTGCTCAAAAACAGGAGGTTGATGAAT
rJMSF050L07+          GAGGGCAGAAGCTAGAAGTTCGACTTATTGATATTGCTCAAAAACAGGAGGTTGATGAAT
rJMSF033I14+          GAGGGCAGAAGCTAGAAGTTCGACTTATTGATATTGCTCAAAAACAGGAGGTTGATGAAT
                      ____________________________________________________________
consensus             GAGGGCAGAAGCTAGAAGTTCGACTTATTGATATTGCTCAAAAACAGGAGGTTGATGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           TTATAATTGGGCTTCCATTATCTAGTGATGGGAATGAGACTCCACAATCAAATAAAGTTC
JMSF050L07-           TTATAATTGGGCTTCCATTATCTAGTGATGGGAATGAGACTCCACAATCAAATAAAGTTC
rJMSF050L07+          TTATAATTGGGCTTCCATTATCTAGTGATGGGAATGAGACTCCACAATCAAATAAAGTTC
rJMSF033I14+          TTATAATTGGGCTTCCATTATCTAGTGATGGGAATGAGACTCCACAATCAAATAAAGTTC
                      ____________________________________________________________
consensus             TTATAATTGGGCTTCCATTATCTAGTGATGGGAATGAGACTCCACAATCAAATAAAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           GAAGCGTTGCAGGTAGACTAGCAGTTCGAGCTGCTGAGAAGGGCTGGAGAGTATACCTGC
JMSF050L07-           GAAGCGTTGCAGGTAGACTAGCAGTTCGAGCTGCTGAGAAGGGCTGGAGAGTATACCTGC
rJMSF050L07+          GAAGCGTTGCAGGTAGACTAGCAGTTCGAGCTGCTGAGAAGGGCTGGAGAGTATACCTGC
rJMSF033I14+          GAAGCGTTGCAGGTAGACTAGCAGTTCGAGCTGCTGAGAAGGGCTGGAGAGTATACCTGC
                      ____________________________________________________________
consensus             GAAGCGTTGCAGGTAGACTAGCAGTTCGAGCTGCTGAGAAGGGCTGGAGAGTATACCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           AGGAAGAGTATGGGACATCAACTCAGGCCATGAGCCGCATGATTGATATGGGCCTCAGCA
JMSF050L07-           AGGAAGAGTATGGGACATCAACTCAGGCCATGAGCCGCATGATTGATATGGGCCTCAGCA
rJMSF050L07+          AGGAAGAGTATGGGACATCAACTCAGGCCATGAGCCGCATGATTGATATGGGCCTCAGCA
rJMSF033I14+          AGGAAGAGTATGGGACATCAACTCAGGCCATGAGCCGCATGATTGATATGGGCCTCAGCA
                      ____________________________________________________________
consensus             AGGAAGAGTATGGGACATCAACTCAGGCCATGAGCCGCATGATTGATATGGGCCTCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           AATCTGCTCGTCAAGGGAAACTTGATGCCTATGCAGCTGTGATGGTGCTTGAGAGATATT
JMSF050L07-           AATCTGCTCGTCAAGGGAAACTTGATGCCTATGCAGCTGTGATGGTGCTTGAGAGATATT
rJMSF050L07+          AATCTGCTCGTCAAGGGAAACTTGATGCCTATGCAGCTGTGATGGTGCTTGAGAGATATT
rJMSF033I14+          AATCTGCTCGTCAAGGGAAACTTGATGCCTATGCAGCTGTGATGGTGCTTGAGAGATATT
                      ____________________________________________________________
consensus             AATCTGCTCGTCAAGGGAAACTTGATGCCTATGCAGCTGTGATGGTGCTTGAGAGATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF033I14-           TCTCAGCCTC                                                  
JMSF050L07-           TCTCAGCCTC                                                  
rJMSF050L07+          TCTCAGCCTCAGGTGAGGGGATAGAACTTGTTTTACCCAAACAATTGGAACTCCAAAACA
rJMSF033I14+          TCTCAGCCTCAGGTGAGGGGATAGAACTTGTTTTACCCAAACAATTGGAACTCCAAAACA
                      ____________________________________________________________
consensus             TCTCAGCCTCAGGTGAGGGGATAGAACTTGTTTTACCCAAACAATTGGAACTCCAAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050L07+          AGCTCAGAAAGGCATCTTCCATGGAAGATGAATTTGATAGTTGACACATGTACACAACCA
rJMSF033I14+          AGCTCAGAAAGGCATCTTCCATGGAAGATGAATTTGATAGTTGACACATGTACACAACCA
                      ____________________________________________________________
consensus             AGCTCAGAAAGGCATCTTCCATGGAAGATGAATTTGATAGTTGACACATGTACACAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050L07+          TATGAGTTCATGAGTGGTAGAGCTATGAGATCCTTAATGCCAAACCTAACTGCAGTGCTA
rJMSF033I14+          TATGAGTTCATGAGTGGTAGAGCTATGAGATCCTTAATGCCAAACCTAACTGCAGTGCTA
                      ____________________________________________________________
consensus             TATGAGTTCATGAGTGGTAGAGCTATGAGATCCTTAATGCCAAACCTAACTGCAGTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050L07+          ATCATGGCTCAACTATGAGTGCATAGCCTATTAGGACGGGACAAAGAGAAAAAAACTTTG
rJMSF033I14+          ATCATGGCTCAACTATGAGTGCATAGCCTATTAGGACGGGACAAAGAGAAAAAAACTTTG
                      ____________________________________________________________
consensus             ATCATGGCTCAACTATGAGTGCATAGCCTATTAGGACGGGACAAAGAGAAAAAAACTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050L07+          ATTTATATATATACATTTTATTCTCTTCTTTTCTAGTCTTTTGTTTATTAATTTTGGAAT
rJMSF033I14+          ATTTATATATATACATTTTATTCTCTTCTTTTCTAGTCTTTTGTTTATTAATTTTGGAAT
                      ____________________________________________________________
consensus             ATTTATATATATACATTTTATTCTCTTCTTTTCTAGTCTTTTGTTTATTAATTTTGGAAT