| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003F12 | Sequence | 343 | 006357 (2) | gb|KDO69302.1| | 1e-07 | hypothetical protein CISIN_1g0434431mg, partial [Citrus sinensis] | 769 | 002916 (3) | emb|CDP00100.1| | 6e-39 | unnamed protein product [Coffea canephora] |
| JMSF033G13 | Sequence | 455 | 006357 (2) | ref|XP_011469757.1| | 5e-45 | PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Fragaria vesca | 793 | 002916 (3) | |||
| JMSF043O03 | Sequence | 635 | 017923 | gb|KDO69302.1| | 1e-19 | hypothetical protein CISIN_1g0434431mg, partial [Citrus sinensis] | 710 | 002916 (3) | emb|CDP00100.1| | 4e-07 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF003F12+ TTCGAGCTCCATTGAAAGATTGGACTAGTCAGAGATGTTTATCTTCCA
____________________________________________________________
consensus TTCGAGCTCCATTGAAAGATTGGACTAGTCAGAGATGTTTATCTTCCA
. : . : . : . : . : . :
rJMSF003F12+ AAGGACTATTATACAGGGGAACCTCGTGGTTTTGCATTTGTTCAGTTTGTCGATTCTTAT
____________________________________________________________
consensus AAGGACTATTATACAGGGGAACCTCGTGGTTTTGCATTTGTTCAGTTTGTCGATTCTTAT
. : . : . : . : . : . :
rJMSF003F12+ GAAGCTGCAGAGGCTCAGTACCACATGGATGGGAAGGTTTTTGCTGGGAGGCAGATATCT
____________________________________________________________
consensus GAAGCTGCAGAGGCTCAGTACCACATGGATGGGAAGGTTTTTGCTGGGAGGCAGATATCT
. : . : . : . : . : . :
rJMSF003F12+ GTGGTTGTTGCAGCTGAGACGAGGAAAAGACCTGAGGATATGAGACGAAAATCTAGGGTC
rJMSF043O03+ TGCAGCTGAGACGAGGAAAAGACCTGAGGATATGAGACGAAAATCTAGGGTC
rJMSF033G13+ TGCAGCTGAGACGAGGAAAAGACCTGAGGATATGAGACGAAAATCTAGGGTC
____________________________________________________________
consensus GTGGTTGTTGCAGCTGAGACGAGGAAAAGACCTGAGGATATGAGACGAAAATCTAGGGTC
. : . : . : . : . : . :
rJMSF003F12+ AGGGGACCATCTGGTTATGGAGGAAGGTCATCGCATTATGGACGTTCTCACTCTCGGTCA
rJMSF043O03+ AGGGGACCATCTGGTTATGGAGGAAGGTCATCGCATTATGGACGTTCTCACTCTCGGTCA
rJMSF033G13+ AGGGGACCATCTGGTTATGGAGGAAGGTCATCGCATTATGGACGTTCTCACTCTCGGTCA
____________________________________________________________
consensus AGGGGACCATCTGGTTATGGAGGAAGGTCATCGCATTATGGACGTTCTCACTCTCGGTCA
. : . : . : . : . : . :
rJMSF003F12+ CGG-TCACGCTCTCCTCCAAATGCATCAGGTTCCAGAGCCCGTCATAGATCAAGGTCCTA
rJMSF043O03+ CGG-TCACGCTCTCCTCCAAATGCATCAGGTTCCAGAGCCCGTCATAGATCAAGGTCCTA
rJMSF033G13+ CGGTTCACGCTCTCCTCCAAATGCATCAGGTTCCAGAGCCCGTCATAGATCAAGGTCCTA
____________________________________________________________
consensus CGG-TCACGCTCTCCTCCAAATGCATCAGGTTCCAGAGCCCGTCATAGATCAAGGTCCTA
. : . : . : . : . : . :
rJMSF003F12+ TTCCCCTGATGATCTACAACGAAGAGATTATTCTGTATCTCCAGATAGAAGGCACTCAAA
rJMSF043O03+ TTCCCCTGATGATCTACAACGAAGAGATTATTCTGTATCTCCAGATAGAAGGCACTCAAA
rJMSF033G13+ TTCCCCTGATGATCTACAACGAAGAGATTATTCTGTATCTCCAGATAGAAGGCACTCAAA
____________________________________________________________
consensus TTCCCCTGATGATCTACAACGAAGAGATTATTCTGTATCTCCAGATAGAAGGCACTCAAA
. : . : . : . : . : . :
rJMSF003F12+ TCACCCTAGGTCTCGACGAGAACATGGTGTCCATCACCGTCGAAGATCAGTTTCTCCAGG
rJMSF043O03+ TCACCCTAGGTCTCGACGAGAACATGGTGTCCATCACCGTCGAAGATCAGTTTCTCCAGG
rJMSF033G13+ TCACCCTAGGTCTCGACGAGAACATGGTGTCCATCACCGTCGAAGATCAGTTTCTCCAGG
____________________________________________________________
consensus TCACCCTAGGTCTCGACGAGAACATGGTGTCCATCACCGTCGAAGATCAGTTTCTCCAGG
. : . : . : . : . : . :
rJMSF003F12+ ATATGAGAATATTGCTGGTGAAAATGGAAACAGCCATGGCAAGGAACATTTGAACGAGGC
rJMSF043O03+ ATATGAGAATATTGCTGGTGAAAATGGAAACAGCCATGGCAAGGAACATTTGAACGAGGC
rJMSF033G13+ ATATGAGAATATTGCTGGTGAAAATGGAAACAGCCATGGCAAGGAACATTTGAACGAGGC
____________________________________________________________
consensus ATATGAGAATATTGCTGGTGAAAATGGAAACAGCCATGGCAAGGAACATTTGAACGAGGC
. : . : . : . : . : . :
rJMSF003F12+ GAGGGAAGCACAAACACAAACACAAACACAAACTCGCTGGAGATCATCACCCAGACAAAC
rJMSF043O03+ GAGGGAAGCACAAACACAAACACAAACACAAACTCGCTGGAGATCATCACCCAGACAAAC
rJMSF033G13+ GAGGGAAGCACAAACACAAACACAAACACAAACTCGCTGGAGATCATCACCCAGACAAAC
____________________________________________________________
consensus GAGGGAAGCACAAACACAAACACAAACACAAACTCGCTGGAGATCATCACCCAGACAAAC
. : . : . : . : . : . :
rJMSF003F12+ ATCAAGATCACCACCTCGGTCTAGGTCTAGATCTGCTGATGTTTTGCCCAGGGATAGCTA
rJMSF043O03+ ATCAAGATCACCACCTCGGTCTAGGTCTAGATCTGCTGATGTTTTGCCCAGGGATAGCTA
rJMSF033G13+ ATCAAGATCACCACCTCGGTCTAGGTCTAGATCTGCTGATGTTTTGCCCAGGGATAGCTA
____________________________________________________________
consensus ATCAAGATCACCACCTCGGTCTAGGTCTAGATCTGCTGATGTTTTGCCCAGGGATAGCTA
. : . : . : . : . : . :
rJMSF003F12+ ATAATCTCAAAGCATCATGACCATACATTCTTCATTTTGCTTCGAGTAGATCTATTGATG
rJMSF043O03+ ATAATCTCAAAGCATCATGACCATACATTCTTCATTTTGCTTCGAGTAGATCTATTGATG
rJMSF033G13+ ATAATCTCAAAGCATCATGACCATACATTCTTCATTTTGCTTCGAGTAGATCTATTGATG
____________________________________________________________
consensus ATAATCTCAAAGCATCATGACCATACATTCTTCATTTTGCTTCGAGTAGATCTATTGATG
. : . : . : . : . : . :
rJMSF003F12+ AATGTTAGCTTTCGGTATTTAAGAATGCAAAACTCTTATTCTTACCATTGTTGTTCTGGT
rJMSF043O03+ AATGTTAGCTTTCGGTATTTAAGAATGCAAAACTCTTATTCTTACCATTGTTGTTCTGGT
rJMSF033G13+ AATGTTAGCTTTCGGTATTTAAGAATGCAAAACTCTTATTCTTACCATTGTTGTTCTGGT
____________________________________________________________
consensus AATGTTAGCTTTCGGTATTTAAGAATGCAAAACTCTTATTCTTACCATTGTTGTTCTGGT
. : . : . : . : . : . :
rJMSF003F12+ TA
rJMSF043O03+ TATTATACTTTGTAGACAAATCAACTGCCATTGGAGGGTTTTGAATTTCATATCCTTTCT
rJMSF033G13+ TATTATACTTTGTAGACAAATCAACTGCCATTGGAGGGTTTTGAATTTCATATCCTTTCT
____________________________________________________________
consensus TATTATACTTTGTAGACAAATCAACTGCCATTGGAGGGTTTTGAATTTCATATCCTTTCT
. : . : . : . : . : . :
rJMSF043O03+ TTCTGTAATATAATATGTTGTCCCCT
rJMSF033G13+ TTCTGTAATATAATATGTTGTCCCCTTGACTCAATTCTTGCCTGTAGGAAAATTGTATGG
____________________________________________________________
consensus TTCTGTAATATAATATGTTGTCCCCTTGACTCAATTCTTGCCTGTAGGAAAATTGTATGG
. : . : . : . : . : . :
rJMSF033G13+ TATTGATTAGCATGTGAGGTATTGGCAAGTGCAGTACTATTGATACCAGTACTGATAATA
____________________________________________________________
consensus TATTGATTAGCATGTGAGGTATTGGCAAGTGCAGTACTATTGATACCAGTACTGATAATA