Contig 002904:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033P18Sequence300007823 (3)ref|XP_009760570.1|8e-20PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]727002904 (3)ref|XP_009760570.1|4e-109PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]
JMSF015F17Sequence420007823 (3)ref|XP_009760570.1|1e-49PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]737002904 (3)ref|XP_009760570.1|2e-116PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]
JMSF031D19Sequence665007823 (3)ref|XP_009760570.1|2e-104PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]769002904 (3)ref|XP_009760570.1|3e-110PREDICTED: protein TRANSPARENT TESTA 12-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF033P18+ GGAGTCAT
rJMSF015F17+ CATCCGGAGTCAT
                      ____________________________________________________________
consensus CATCCGGAGTCAT
 
. : . : . : . : . : . :
rJMFF033P18+ GCTATGCTTGGAAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
rJMSF015F17+ GCTATGCTTGGAAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
rJMSF031D19+ AAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
                      ____________________________________________________________
consensus GCTATGCTTGGAAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
 
. : . : . : . : . : . :
rJMFF033P18+ TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
rJMSF015F17+ TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
rJMSF031D19+ TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
                      ____________________________________________________________
consensus TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
 
. : . : . : . : . : . :
rJMFF033P18+ GATTCCTCTTGTTTTCTTCGCTGGAANTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
rJMSF015F17+ GATTCCTCTTGGTTTCTTCGCTGGAACTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
rJMSF031D19+ GATTCCTCTTGGTTTCTTCGCTGGAACTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
                      ____________________________________________________________
consensus GATTCCTCTTGGTTTCTTCGCTGGAACTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
 
. : . : . : . : . : . :
rJMFF033P18+ GAATGGAAAAGGAGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
rJMSF015F17+ GAATGGAAAAGGGGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
rJMSF031D19+ GAATGGAAAAGGAGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
                      ____________________________________________________________
consensus GAATGGAAAAGGAGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
 
. : . : . : . : . : . :
rJMFF033P18+ TCTNTTNTTTTGGCTGCTAATCNTAACNTTCGACAACCAGCTTGCCNTAATTTTCTCCTN
rJMSF015F17+ TCTCTTCTTTTGGCTGCTAATCCTAACCTTCGACAACCAGCTTGCCCTAATTTTCTCCTC
rJMSF031D19+ TCTCTTCTTTTGGCTGCTAATCCTAACCTTCGACAACCAGCTTGCCCTAATTTTCTCCTC
                      ____________________________________________________________
consensus TCTCTTCTTTTGGCTGCTAATCCTAACCTTCGACAACCAGCTTGCCCTAATTTTCTCCTC
 
. : . : . : . : . : . :
rJMFF033P18+ TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTNTTAGCATTCACCGTTCT
rJMSF015F17+ TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTCTTAGCATTCACCGTTCT
rJMSF031D19+ TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTCTTAGCATTCACCGTTCT
                      ____________________________________________________________
consensus TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTCTTAGCATTCACCGTTCT
 
. : . : . : . : . : . :
rJMFF033P18+ TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
rJMSF015F17+ TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
rJMSF031D19+ TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
                      ____________________________________________________________
consensus TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
 
. : . : . : . : . : . :
rJMFF033P18+ TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
rJMSF015F17+ TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
rJMSF031D19+ TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
                      ____________________________________________________________
consensus TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
 
. : . : . : . : . : . :
rJMFF033P18+ GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
rJMSF015F17+ GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
rJMSF031D19+ GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
                      ____________________________________________________________
consensus GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
 
. : . : . : . : . : . :
rJMFF033P18+ AGCAATGCAACCTATAATTTTGTGTATAATCNCCATAAGATGTGATTGGGAAAAAGAGGC
rJMSF015F17+ AGCAATGCAAACTATAATTTTGTGTATAATCACCATAAGATGTGATTGGGAAAAAGAGGC
rJMSF031D19+ AGCAATGCAAACTATAATTTTGTGTATAATCACCATAAGATGTGATTGGGAAAAAGAGGC
                      ____________________________________________________________
consensus AGCAATGCAAACTATAATTTTGTGTATAATCACCATAAGATGTGATTGGGAAAAAGAGGC
 
. : . : . : . : . : . :
rJMFF033P18+ TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
rJMSF015F17+ TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
rJMSF031D19+ TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
                      ____________________________________________________________
consensus TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
 
. : . : . : . : . : . :
rJMFF033P18+ GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTT
rJMSF015F17+ GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTT
rJMSF031D19+ GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTTT
                      ____________________________________________________________
consensus GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTTT
 
. : . : . : . : . : . :
rJMSF031D19+ GAGGAATTGATCTTTCATTTAATGGATTTTAATTTTCTATTAATTATAATGAGGGAATCA
                      ____________________________________________________________
consensus GAGGAATTGATCTTTCATTTAATGGATTTTAATTTTCTATTAATTATAATGAGGGAATCA