Contig 002898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010J18Sequence607002898 (7)ref|XP_004242663.1|9e-112PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers
JMSF001O13Sequence199013357 (6)712002898 (7)gb|KJB53846.1|9e-104hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF022K08Sequence675013357 (6)ref|XP_004242663.1|5e-67PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers747002898 (7)gb|KJB53846.1|1e-105hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF023J15Sequence654013357 (6)ref|XP_004242663.1|1e-73PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers754002898 (7)gb|KJB53846.1|9e-110hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF023K08Sequence661013357 (6)ref|XP_004242663.1|5e-64PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers738002898 (7)gb|KJB53846.1|2e-109hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF029M23Sequence651013357 (6)ref|XP_004242663.1|6e-73PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers605002898 (7)ref|XP_004973082.1|1e-75PREDICTED: preprotein translocase subunit SECY, chloroplastic-like [Setaria ita
JMSF039K10Sequence696013357 (6)ref|XP_004242663.1|4e-70PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers912002898 (7)gb|KJB53846.1|3e-148hypothetical protein B456_009G007500 [Gossypium raimondii]

Alignment

This contig is upended


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JMFN010J18-                                       CAAGTTGCAAGAACTTCAGAAAAGAGAAGGTG
                      ____________________________________________________________
consensus                                         CAAGTTGCAAGAACTTCAGAAAAGAGAAGGTG
 
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JMFN010J18-           AAGCTGGAAGAAAGAAAGTGCTTCAGTATACCCGCTATGCATCTGTAGGGTTTGCCATTG
                      ____________________________________________________________
consensus             AAGCTGGAAGAAAGAAAGTGCTTCAGTATACCCGCTATGCATCTGTAGGGTTTGCCATTG
 
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JMFN010J18-           TACAGGCAATCGGCCAAGCACTATATCTTCGCCCTTATGTCGATGACTTTAGTACTCAGT
                      ____________________________________________________________
consensus             TACAGGCAATCGGCCAAGCACTATATCTTCGCCCTTATGTCGATGACTTTAGTACTCAGT
 
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JMFN010J18-           GGGTTCTTTCTACTGTTGTTCTGTTGACTCTTGGTTCAGTATTTACGACGTACATTGGGG
                      ____________________________________________________________
consensus             GGGTTCTTTCTACTGTTGTTCTGTTGACTCTTGGTTCAGTATTTACGACGTACATTGGGG
 
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JMFN010J18-           AGCGAATATCCGATTTAAAACTAGGAAATGGTACATCTCTTTTGATCTTCACAAATATCA
rJMSF039K10+                                                CTTTTGATCTTCACAAATATCA
                      ____________________________________________________________
consensus             AGCGAATATCCGATTTAAAACTAGGAAATGGTACATCTCTTTTGATCTTCACAAATATCA
 
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JMFN010J18-           TCTCCTACTTG-CCAGCATCCTTT-GGTAGGACAGTTGCACAGGCATATCAAGATGGAAA
rJMSF039K10+          TCTCCTACTTGNCCAGCATCCTTTGGGTAGGACAGTTGCACAGGCATATCAAGATGGAAA
                      ____________________________________________________________
consensus             TCTCCTACTTGNCCAGCATCCTTTGGGTAGGACAGTTGCACAGGCATATCAAGATGGAAA
 
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JMFN010J18-           CTATGTTGGGCTCGTTGGCATCATTGTTTCCTTCGCCCTTTTAGTCCTTAGCATAGTTTA
rJMSF039K10+          CTATGTTGGGCTCGTTGGCATCATTGTTTCCTTCGCCCTTTTAGTCCTTAGCATAGTTTA
                      ____________________________________________________________
consensus             CTATGTTGGGCTCGTTGGCATCATTGTTTCCTTCGCCCTTTTAGTCCTTAGCATAGTTTA
 
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JMFN010J18-           CGTACAGGAAGCAGAGAGGAAAATTCCACTTAACTATGCCTCAAGATATACTAGCAAGAC
rJMSF039K10+          CGTACAGGAAGCAGAGAGGAAAATTCCACTTAACTATGCCTCAAGATATACTAGCAAGAC
                      ____________________________________________________________
consensus             CGTACAGGAAGCAGAGAGGAAAATTCCACTTAACTATGCCTCAAGATATACTAGCAAGAC
 
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JMFN010J18-           TGGAGGCCTTCAAAAATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF039K10+          TGGAGGCCTTCAAAAATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF023K08+                      AAAATCTGCNTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF001O13+                                             AAGTAAATAGTTCAGGAGTTATGCC
rJMSF022K08+                                          TTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF023J15+                         ATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
                      ____________________________________________________________
consensus             TGGAGGCCTTCAAAAATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
 
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JMFN010J18-           AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF039K10+          AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF023K08+          AATTATCTTCTNTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGN
rJMSF001O13+          AATTATCTTCTCTACATCATCATNGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF022K08+          AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF023J15+          AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
                      ____________________________________________________________
consensus             AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
 
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JMFN010J18-           TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCT                       
rJMSF039K10+          TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF023K08+          TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF001O13+          TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF022K08+          TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF023J15+          TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF029M23+                                                                 CCAAC
                      ____________________________________________________________
consensus             TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
 
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rJMSF039K10+          AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF023K08+          AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF001O13+          AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF022K08+          AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF023J15+          AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF029M23+          AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
                      ____________________________________________________________
consensus             AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
 
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rJMSF039K10+          CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF023K08+          CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF001O13+          CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF022K08+          CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF023J15+          CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF029M23+          CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
                      ____________________________________________________________
consensus             CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
 
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rJMSF039K10+          GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF023K08+          GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF001O13+          GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF022K08+          GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF023J15+          GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF029M23+          GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
                      ____________________________________________________________
consensus             GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
 
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rJMSF039K10+          TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF023K08+          TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF001O13+          TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF022K08+          TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF023J15+          TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF029M23+          TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
                      ____________________________________________________________
consensus             TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
 
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rJMSF039K10+          TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF023K08+          TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF001O13+          TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF022K08+          TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF023J15+          TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF029M23+          TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
                      ____________________________________________________________
consensus             TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
 
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rJMSF039K10+          CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF023K08+          CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF001O13+          CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF022K08+          CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF023J15+          CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF029M23+          CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
                      ____________________________________________________________
consensus             CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
 
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rJMSF039K10+          CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF023K08+          CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF001O13+          CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF022K08+          CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF023J15+          CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF029M23+          CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
                      ____________________________________________________________
consensus             CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
 
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rJMSF039K10+          CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF023K08+          CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF001O13+          CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF022K08+          CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF023J15+          CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF029M23+          CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
                      ____________________________________________________________
consensus             CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
 
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rJMSF039K10+          GATTTGTGTATTTAACTCAAAC                                      
rJMSF023K08+          GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF001O13+          GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF022K08+          GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF023J15+          GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF029M23+          GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
                      ____________________________________________________________
consensus             GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
 
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rJMSF023K08+          ATTAGATT                                                    
rJMSF001O13+          ATTAGATTTGTAC                                               
rJMSF022K08+          ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAA               
rJMSF023J15+          ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAA               
rJMSF029M23+          ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAAGAACAGTTCAGTCTT
                      ____________________________________________________________
consensus             ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAAGAACAGTTCAGTCTT