Contig 002897:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034M22Sequence516003726 (3)ref|XP_006339835.1|5e-81PREDICTED: metal transporter Nramp3-like [Solanum tuberosum]590002897 (3)emb|CBI33737.3|8e-40unnamed protein product [Vitis vinifera]
JMSF013K09Sequence502003726 (3)ref|XP_006339835.1|1e-69PREDICTED: metal transporter Nramp3-like [Solanum tuberosum]762002897 (3)gb|KHN12967.1|1e-85Metal transporter Nramp3 [Glycine soja]
JMSF029L23Sequence707003726 (3)ref|XP_006339835.1|4e-112PREDICTED: metal transporter Nramp3-like [Solanum tuberosum]738002897 (3)ref|XP_003517323.1|6e-72PREDICTED: metal transporter Nramp3-like [Glycine max]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+                                                       TGAAAATGCAGGGCA
                      ____________________________________________________________
consensus                                                          TGAAAATGCAGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          GTATCTTCAGGAGAAGTATGGAGGAGGGTTGCTTCCAATCCTTTACATATGGGCTATTGG
rJMSF029L23+                                                    TTACATATGGGCTATTGG
                      ____________________________________________________________
consensus             GTATCTTCAGGAGAAGTATGGAGGAGGGTTGCTTCCAATCCTTTACATATGGGCTATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          ATTGCTAGCTGCTGGTCAAAGCAGCACTATAACTGGAACCTATGCCGGGCAGTTCATCAT
rJMSF029L23+          ATTGCTAGCTGCTGGTCAAAGCAGCACTATAACTGGAACCTATGCCGGGCAGTTCATCAT
                      ____________________________________________________________
consensus             ATTGCTAGCTGCTGGTCAAAGCAGCACTATAACTGGAACCTATGCCGGGCAGTTCATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          GGGAGGCTTCCTGCATATGCGGTTGAAGAAATGGCAGAGGGCGTTGATAACAAGAAGCTT
rJMSF029L23+          GGGAGGCTTCCTGCATATGCGGTTGAAGAAATGGCAGAGGGCGTTGATAACAAGAAGCTT
                      ____________________________________________________________
consensus             GGGAGGCTTCCTGCATATGCGGTTGAAGAAATGGCAGAGGGCGTTGATAACAAGAAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          TGCTATTATCCCAACTCTCATTGTTGCCCTTATTTTTGACACCTCCAAGGACTCGTTGGA
rJMFF034M22+                 ATCCCAACTCTCATTGTTGCCCTTATTTTTGACACCTCCAAGGACTCGTTGGA
rJMSF029L23+          TGCTATTATCCCAACTCTCATTGTTGCCCTTATTTTTGACACCTCCAAGGACTCGTTGGA
                      ____________________________________________________________
consensus             TGCTATTATCCCAACTCTCATTGTTGCCCTTATTTTTGACACCTCCAAGGACTCGTTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          TGTTCTAAACGAGTGGCTTAATATTCTTCAGTCAGTCCAGATCCCTTTTGCTCTCATTCC
rJMFF034M22+          TGTTCTAAACGAGTGGCTTAATATTCTTCAGTCAGTCCAGATCCCTTTTGCTCTCATTCC
rJMSF029L23+          TGTTCTAAACGAGTGGCTTAATATTCTTCAGTCAGTCCAGGTCCCTTTTGCTCTCATTCC
                      ____________________________________________________________
consensus             TGTTCTAAACGAGTGGCTTAATATTCTTCAGTCAGTCCAGATCCCTTTTGCTCTCATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          CCTTCTTTGCCTAGTCTCCAAGGAGGAACTAATGGGCGTTTTCAAGATTAACCCCATCCT
rJMFF034M22+          CCTTCTTTGCCTAGTCTCCAAGGAGGAACTAATGGGCGTTTTCAAGATTAACCCCATCCT
rJMSF029L23+          CCTTCTTTGCCTAGTCTCCAAGGAGGAACTAATGGGCGTTTTCAAGATTAACCCCATCCT
                      ____________________________________________________________
consensus             CCTTCTTTGCCTAGTCTCCAAGGAGGAACTAATGGGCGTTTTCAAGATTAACCCCATCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          CAAGGTAATATCATGGCTCGTCGCTACCTTGGTGATTATCATTAATGGATATCTCTTGCT
rJMFF034M22+          CAAGGTAATATCATGGCTCGTCGCTACCTTGGTGATTATCATTAATGGATATCTCTTGCT
rJMSF029L23+          CAAGGTAATATCATGGCTCGTCGCTACCTTGGTGATTATCATTAATGGATATCTCTTGCT
                      ____________________________________________________________
consensus             CAAGGTAATATCATGGCTCGTCGCTACCTTGGTGATTATCATTAATGGATATCTCTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          GGACTTCTTCTCTTCAGAAGTTAGTGGAGTGGTGTTTACATCTGCAGTATTTGCTTTCAC
rJMFF034M22+          GGACTTCTTCTCTTCAGAAGTTAGTGGAGTGGTGTTTACATCTGCAGTATTTGCTTTCAC
rJMSF029L23+          GGACTTCTTCTCTTCAGAAGTTAGTGGAGTGGTGTTTACATCTGCAGTATTTGCTTTCAC
                      ____________________________________________________________
consensus             GGACTTCTTCTCTTCAGAAGTTAGTGGAGTGGTGTTTACATCTGCAGTATTTGCTTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          AGCTGCATATGTTGCCTTCATAATATATCTCGTGTCGAGGAACATACCCTTTCTCCAAAA
rJMFF034M22+          AGCTGCATATGTTGCCTTCATAATATATCTCGTGTCGAGGAACATACCCTTTCTCCAAAA
rJMSF029L23+          AGCTGCATATGTTGCCTTCATAATATATCTCGTGTCGAGGAACATACCCTTTCTCCAAAA
                      ____________________________________________________________
consensus             AGCTGCATATGTTGCCTTCATAATATATCTCGTGTCGAGGAACATACCCTTTCTCCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          CAAGAGGATCACAGATGAAGTGAGTTGATTCAGTGCCCCTCCTAACACTTATGTGTACCA
rJMFF034M22+          CAAGAGGATCACAGATGAAGTGAGTTGATTCAGTGCCCCTCCTAACACTTATGTGTACCA
rJMSF029L23+          CAAGAGGATCACAGATGAAGTGAGTTGATTCAGTGCCCCTCCTAACACTTATGTGTACCA
                      ____________________________________________________________
consensus             CAAGAGGATCACAGATGAAGTGAGTTGATTCAGTGCCCCTCCTAACACTTATGTGTACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          TGCCAATCTAACCTTTCCAGCTAATGGTTGCTTCTTGAATTTAGTAGTCGTGGGACGAAA
rJMFF034M22+          TGCCAATCTAACCTTTCCAGCTAATGGTTGCTTCTTGAATTTAGTAGTCGTGGGACGAAA
rJMSF029L23+          TGCCAATCTAACCTTTCCAGCTAATGGTTGCTTCTTGAATTTAGTAGTCGTGGGACGAAA
                      ____________________________________________________________
consensus             TGCCAATCTAACCTTTCCAGCTAATGGTTGCTTCTTGAATTTAGTAGTCGTGGGACGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          ATGGAGATAAGGGGCCCCTCTTTATTACAAGGAAGATGACAGAATGTATATTATGGTCTT
rJMFF034M22+          ATGGAGATAAGGGGCCCCTCTTTATTACAAGGAAGATGACAGAATGTATATTATGGTCTT
rJMSF029L23+          ATGGAGATAAGGGGCCCCTCTTTATTACAAGGAAGATGACAGAATGTATATTATGGTCTT
                      ____________________________________________________________
consensus             ATGGAGATAAGGGGCCCCTCTTTATTACAAGGAAGATGACAGAATGTATATTATGGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013K09+          GTAGATCTTTGAGAACCTTGCAAGT                                   
rJMFF034M22+          GTAGATCTTTGAGAACCTTGCAAGTTGCAACCTTGTAGTTTTATGTTAAAGAAGAAA   
rJMSF029L23+          GTAGATCTTTGAGAACCTTGCAAGTTGCAACCTTGTAGTTTTATTGTAAAGAAGAAATAC
                      ____________________________________________________________
consensus             GTAGATCTTTGAGAACCTTGCAAGTTGCAACCTTGTAGTTTTATTTTAAAGAAGAAATAC