| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035L17 | Sequence | 484 | 002896 (7) | ref|XP_009794858.1| | 88.2 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 | 160 | 011139 (2) | |||
| JMFF040M08 | Sequence | 488 | 002896 (7) | ref|XP_009794858.1| | 88.2 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 | 186 | 011139 (2) | |||
| JMFF048A20 | Sequence | 435 | 002896 (7) | ref|XP_009794858.1| | 88.2 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 | 378 | 002896 (7) | ref|XP_009794858.1| | 85.1 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 |
| JMFN019L12 | Sequence | 482 | 002896 (7) | ref|XP_009794858.1| | 88.2 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 | |||||
| JMSF029K08 | Sequence | 446 | 002896 (7) | ref|XP_009794858.1| | 88.2 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 | 400 | 002896 (7) | ref|XP_009794858.1| | 88.2 | PREDICTED: uncharacterized protein LOC104241615 [Nicotiana sylvestris] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
JMFN019L12+ TGTTTTTTTTTTTTTTGG
____________________________________________________________
consensus TGTTTTTTTTTTTTTTGG
. : . : . : . : . : . :
JMFN019L12+ TGTTTTTTGTTTTTGTTTTGGTTGTTGTTTTTTTTTTTTTTTTTGCATATAAAGTTTCTT
JMFF035L17+ TGCATATAAAGTTTCTT
JMFF048A20+ GCATATAAAGTTTCTT
rJMFF048A20- GCATATAAAGTTTCTT
JMFF040M08+ TGCATATAAAGTTTCTT
JMSF029K08+ TGCATATAAAGTTTCTT
____________________________________________________________
consensus TGTTTTTTGTTTTTGTTTTGGTTGTTGTTTTTTTTTTTTTTTTTGCATATAAAGTTTCTT
. : . : . : . : . : . :
JMFN019L12+ GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
JMFF035L17+ GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
JMFF048A20+ GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
rJMFF048A20- GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
JMFF040M08+ GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
JMSF029K08+ GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
rJMSF029K08- GGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
____________________________________________________________
consensus GTTTATATATACCAACCATGGGATTTCACATACACGAAACAATATTGTCATCATCGTTAA
. : . : . : . : . : . :
JMFN019L12+ TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
JMFF035L17+ TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
JMFF048A20+ TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
rJMFF048A20- TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
JMFF040M08+ TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
JMSF029K08+ TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
rJMSF029K08- TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
____________________________________________________________
consensus TTCAAAGAATTAAGAATTTTCTGCGACCAATTCAATCAGTTGGGAATGATTGTCTCGAAA
. : . : . : . : . : . :
JMFN019L12+ CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
JMFF035L17+ CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
JMFF048A20+ CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
rJMFF048A20- CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
JMFF040M08+ CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
JMSF029K08+ CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
rJMSF029K08- CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
____________________________________________________________
consensus CAGTGGATTCCATCCAACTCCAGGGCGAACCTCTGTTCTTGCCGGGGCTTCTTATCATAC
. : . : . : . : . : . :
JMFN019L12+ GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
JMFF035L17+ GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
JMFF048A20+ GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
rJMFF048A20- GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
JMFF040M08+ GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
JMSF029K08+ GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
rJMSF029K08- GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
____________________________________________________________
consensus GACGGCGCCGGAGAGGCGGCGGCCTTGTTCGAACCACCGCTTGCCGGTGCCGGAGCCGGG
. : . : . : . : . : . :
JMFN019L12+ AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
JMFF035L17+ AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
JMFF048A20+ AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
rJMFF048A20- AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
JMFF040M08+ AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
JMSF029K08+ AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
rJMSF029K08- AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
____________________________________________________________
consensus AGCTCTTTCTGTTGCTGCTGTTCCTTGGCGGAAAAGGGTACCCCAGAAAGGCCCAGTTTT
. : . : . : . : . : . :
JMFN019L12+ TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
JMFF035L17+ TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
JMFF048A20+ TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
rJMFF048A20- TGGCCGAAGAGCTCTGCAGAAAGAGCATCANAGGAACTGAAAATCGACATCATCATCATC
JMFF040M08+ TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
JMSF029K08+ TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
rJMSF029K08- TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
____________________________________________________________
consensus TGGCCGAAGAGCTCTGCAGAAAGAGCATCAAAGGAACTGAAAATCGACATCATCATCATC
. : . : . : . : . : . :
JMFN019L12+ TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTA
JMFF035L17+ TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTAGAACTGCTTGTTGAC
JMFF048A20+ TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTAGAACTGCTTGTTGAC
rJMFF048A20- TT
JMFF040M08+ TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTAGAACTGCTTGTTGAC
JMSF029K08+ TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTAGAACTGCTTGTTGAC
rJMSF029K08- TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTAGAACTGCTTGTTGACC
____________________________________________________________
consensus TTCTCTGTGGGCGAAATACTGGGAATCTTGAAAGGAAGATCTTAGAACTGCTTGTTGACC