Contig 002893:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS153E12Sequence612002893 (4)ref|XP_002324001.2|4e-28hypothetical protein POPTR_0017s10720g [Populus trichocarpa] gb|EEF04134.2| hypo
JMSF021I01Sequence691000730 (4)gb|KCW55915.1|2e-25hypothetical protein EUGRSUZ_I01713 [Eucalyptus grandis]759002893 (4)ref|XP_010029073.1|110PREDICTED: uncharacterized protein LOC104419196 [Eucalyptus grandis] gb|KCW55917
JMSF029E13Sequence686000730 (4)gb|KCW55915.1|2e-25hypothetical protein EUGRSUZ_I01713 [Eucalyptus grandis]711002893 (4)ref|XP_002324001.2|3e-19hypothetical protein POPTR_0017s10720g [Populus trichocarpa] gb|EEF04134.2| hypo
JMSF031L05Sequence656000730 (4)gb|KCW55915.1|1e-25hypothetical protein EUGRSUZ_I01713 [Eucalyptus grandis]571002893 (4)ref|XP_004288435.1|62.4PREDICTED: uncharacterized protein LOC101298064 [Fragaria vesca subsp. vesca]

Alignment

This contig is upended


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JMFS153E12-                    GGCATGATATTGGCATGGGGAGCTGACGCTTCCCCTTTTGACACATACAAA
                      ____________________________________________________________
consensus                      GGCATGATATTGGCATGGGGAGCTGACGCTTCCCCTTTTGACACATACAAA
 
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JMFS153E12-           GAAGAATGTCTTTGGAGGGTGGAGACTTGGGGAACTGCACTTGTGGCCGGTACCATCGAC
                      ____________________________________________________________
consensus             GAAGAATGTCTTTGGAGGGTGGAGACTTGGGGAACTGCACTTGTGGCCGGTACCATCGAC
 
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JMFS153E12-           CCGATTCGCCAATGGATTAATGCAAGCACTACACAAGGAGTGGGGAAGAATTTCATTTTC
                      ____________________________________________________________
consensus             CCGATTCGCCAATGGATTAATGCAAGCACTACACAAGGAGTGGGGAAGAATTTCATTTTC
 
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JMFS153E12-           TTGTATGGAGGGAACAACATTGAATGGGCTCGGGAATTCAATGCCAAGGTAAAATCATCA
rJMSF021I01+                   GGGAACAACATTGAATGGGCTCGGGAATTCAATGCCAAGGTAAAATCATCA
                      ____________________________________________________________
consensus             TTGTATGGAGGGAACAACATTGAATGGGCTCGGGAATTCAATGCCAAGGTAAAATCATCA
 
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JMFS153E12-           CTTTCATCGGACATTGAACCAAAGATGATATATGTTGGAAAAAACAAGGAGGTAAGATCA
rJMSF021I01+          CTTTCATCGGACATTGAACCAAAGATGATATATGTTGGAAAAAACAAGGAGGTAAGATCA
rJMSF029E13+                        TGAACCAAAGATGATATATGTTGGAAAAACCAAGGAGGTAAGATCA
                      ____________________________________________________________
consensus             CTTTCATCGGACATTGAACCAAAGATGATATATGTTGGAAAAAACAAGGAGGTAAGATCA
 
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JMFS153E12-           AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
rJMSF021I01+          AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
rJMSF031L05+                                                             GCTCGNTTA
rJMSF029E13+          AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
                      ____________________________________________________________
consensus             AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
 
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JMFS153E12-           AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
rJMSF021I01+          AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
rJMSF031L05+          AAAAGCATGTTATNGTCAAGGATNTACTATNTAAAAAAGACGAGTTCTAAAGATGCAACC
rJMSF029E13+          AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
                      ____________________________________________________________
consensus             AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
 
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JMFS153E12-           GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
rJMSF021I01+          GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
rJMSF031L05+          GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
rJMSF029E13+          GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
                      ____________________________________________________________
consensus             GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
 
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JMFS153E12-           GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
rJMSF021I01+          GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
rJMSF031L05+          GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGTCCCGATGTGGTGACGGAGAAAAAAT
rJMSF029E13+          GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
                      ____________________________________________________________
consensus             GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
 
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JMFS153E12-           GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
rJMSF021I01+          GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
rJMSF031L05+          GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
rJMSF029E13+          GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
                      ____________________________________________________________
consensus             GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
 
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JMFS153E12-           CGAGGCATTTGACGAGTACTAT                                      
rJMSF021I01+          CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTACTCCGCAACACCAACATTGTTG
rJMSF031L05+          CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTNCTNCGCAACACCAACATTGTTG
rJMSF029E13+          CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTACTCCGCAACACCAACATTGTTG
                      ____________________________________________________________
consensus             CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTACTCCGCAACACCAACATTGTTG
 
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rJMSF021I01+          TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
rJMSF031L05+          TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
rJMSF029E13+          TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
                      ____________________________________________________________
consensus             TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
 
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rJMSF021I01+          AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
rJMSF031L05+          AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
rJMSF029E13+          AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
                      ____________________________________________________________
consensus             AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
 
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rJMSF021I01+          CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
rJMSF031L05+          CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
rJMSF029E13+          CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
                      ____________________________________________________________
consensus             CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
 
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rJMSF021I01+          ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
rJMSF031L05+          ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
rJMSF029E13+          ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
                      ____________________________________________________________
consensus             ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
 
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rJMSF021I01+          TTCTAGCTAATTAATTGTTTT                                       
rJMSF031L05+          TTCTAGCTAATTAATTGTTTT                                       
rJMSF029E13+          TTCTAGCTAATTAATTGTTTTTGGCAGCACAAATACTAAATTTCTATTTTGTGTGTTTTT
                      ____________________________________________________________
consensus             TTCTAGCTAATTAATTGTTTTTGGCAGCACAAATACTAAATTTCTATTTTGTGTGTTTTT