| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF019F23 | Sequence | 465 | 002271 (5) | emb|CDP09162.1| | 4e-08 | unnamed protein product [Coffea canephora] | 788 | 002891 (3) | ref|XP_009616257.1| | 9e-60 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor |
| JMSF026N08 | Sequence | 652 | 002271 (5) | emb|CDP09162.1| | 6e-30 | unnamed protein product [Coffea canephora] | 765 | 002891 (3) | ref|XP_009616257.1| | 2e-56 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor |
| JMSF028L07 | Sequence | 672 | 002271 (5) | emb|CDP09162.1| | 8e-33 | unnamed protein product [Coffea canephora] | 799 | 002891 (3) | ref|XP_009616257.1| | 1e-59 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor |
This contig is upended
. : . : . : . : . : . :
rJMSF019F23+ CTACTGGC
rJMSF028L07+ CTGGACGTGTTCTACTGGC
____________________________________________________________
consensus CTGGACGTGTTCTACTGGC
. : . : . : . : . : . :
rJMSF019F23+ GCACTTGATGACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
rJMSF026N08+ GACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
rJMSF028L07+ GCACNTGATGACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
____________________________________________________________
consensus GCACTTGATGACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
. : . : . : . : . : . :
rJMSF019F23+ CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
rJMSF026N08+ CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
rJMSF028L07+ CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
____________________________________________________________
consensus CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
. : . : . : . : . : . :
rJMSF019F23+ ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
rJMSF026N08+ ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
rJMSF028L07+ ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
____________________________________________________________
consensus ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
. : . : . : . : . : . :
rJMSF019F23+ GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
rJMSF026N08+ GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
rJMSF028L07+ GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
____________________________________________________________
consensus GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
. : . : . : . : . : . :
rJMSF019F23+ ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
rJMSF026N08+ ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
rJMSF028L07+ ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
____________________________________________________________
consensus ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
. : . : . : . : . : . :
rJMSF019F23+ CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
rJMSF026N08+ CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
rJMSF028L07+ CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
____________________________________________________________
consensus CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
. : . : . : . : . : . :
rJMSF019F23+ AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
rJMSF026N08+ AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
rJMSF028L07+ AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
____________________________________________________________
consensus AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
. : . : . : . : . : . :
rJMSF019F23+ CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
rJMSF026N08+ CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
rJMSF028L07+ CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
____________________________________________________________
consensus CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
. : . : . : . : . : . :
rJMSF019F23+ GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
rJMSF026N08+ GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
rJMSF028L07+ GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
____________________________________________________________
consensus GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
. : . : . : . : . : . :
rJMSF019F23+ TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
rJMSF026N08+ TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
rJMSF028L07+ TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
____________________________________________________________
consensus TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
. : . : . : . : . : . :
rJMSF019F23+ ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
rJMSF026N08+ ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
rJMSF028L07+ ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
____________________________________________________________
consensus ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
. : . : . : . : . : . :
rJMSF019F23+ GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
rJMSF026N08+ GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
rJMSF028L07+ GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
____________________________________________________________
consensus GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
. : . : . : . : . : . :
rJMSF019F23+ AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAAC
rJMSF026N08+ AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAAC
rJMSF028L07+ AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAACCAAGTTGTGTA
____________________________________________________________
consensus AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAACCAAGTTGTGTA