Contig 002890:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-               GGGAAAGAAGGATAACGTCCAGGAGACTAGCTGAGTGGTAGAAGCTACTAAGCCAG
JMSF025J21-                                                      AGAAGCTACTAAGCCAG
                      ____________________________________________________________
consensus                 GGGAAAGAAGGATAACGTCCAGGAGACTAGCTGAGTGGTAGAAGCTACTAAGCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           AAACAAACGCATTGCTCCTCCGATTCTATGCCTTCATGCACCATGTCTTTGGCTCCATTG
JMSF025J21-           AAACAAACGCATTGCTCCTCCGATTCTATGCCTTCATGCACCATGTCTTTGGCTCCATTG
                      ____________________________________________________________
consensus             AAACAAACGCATTGCTCCTCCGATTCTATGCCTTCATGCACCATGTCTTTGGCTCCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           AACCACAGTGCAGTCGCTACCAGCATTTTCCCTCACCTATGTCCTCCGTCCTCCTCCCCA
JMSF025J21-           AACCACAGTGCAGTCGCTACCAGCATTTTCCCTCACCTATGTCCTCCGTCCTCCTCCCCA
                      ____________________________________________________________
consensus             AACCACAGTGCAGTCGCTACCAGCATTTTCCCTCACCTATGTCCTCCGTCCTCCTCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           TCATCCTTTTCACTGCCATCATTCAACCCTGCGCTCAACCTCAAACGCAGAAATTCTACT
JMSF025J21-           TCATCCTTTTCACTGCCATCATTCAACCCTGCGCTCAACCTCAAACGCAGAAATTCTACT
                      ____________________________________________________________
consensus             TCATCCTTTTCACTGCCATCATTCAACCCTGCGCTCAACCTCAAACGCAGAAATTCTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           GGTTGGAGAGTTCGATGCTCCGTCGCCACTGTTTCTCCCTCTAAGGTCAACGACAGTGGT
JMSF025J21-           GGTTGGAGAGTTCGATGCTCCGTCGCCACTGTTTCTCCCTCTAAGGTCAACGACAGTGGT
                      ____________________________________________________________
consensus             GGTTGGAGAGTTCGATGCTCCGTCGCCACTGTTTCTCCCTCTAAGGTCAACGACAGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           AATCCTTTCCCGACGTTTGACTGCGTTATCGTTGGCGCAGGAATCAGCGGTCTCTGCACT
JMSF025J21-           AATCCTTTCCCGACGTTTGACTGCGTTATCGTTGGCGCAGGAATCAGCGGTCTCTGCACT
                      ____________________________________________________________
consensus             AATCCTTTCCCGACGTTTGACTGCGTTATCGTTGGCGCAGGAATCAGCGGTCTCTGCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           GCCCAAGCCCTCTCCACCAGCTACCCCAATTTGTTGGTGACCGAGGCCAGAGATCGAGTT
JMSF025J21-           GCCCAAGCCCTCTCCACCAGCTACCCCAATTTGTTGGTGACCGAGGCCAGAGATCGAGTT
                      ____________________________________________________________
consensus             GCCCAAGCCCTCTCCACCAGCTACCCCAATTTGTTGGTGACCGAGGCCAGAGATCGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           GGCGGTAACATCACGACTGTAGAGAGGGAAGGTTATCTCTGGGAAGAAGGTCCCAATAGC
JMSF025J21-           GGCGGTAACATCACGACTGTAGAGAGGGAAGGTTATCTCTGGGAAGAAGGTCCCAATAGC
                      ____________________________________________________________
consensus             GGCGGTAACATCACGACTGTAGAGAGGGAAGGTTATCTCTGGGAAGAAGGTCCCAATAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           TTCCAGCCTTCGGAGGCCGTGCTCAGGATGGTGGTTGATTGTGGATTGAAGGACGATTTG
JMSF025J21-           TTCCAGCCTTCGGAGGCCGTGCTCAGGATGGTGGTTGATTGTGGATTGAAGGACGATTTG
                      ____________________________________________________________
consensus             TTCCAGCCTTCGGAGGCCGTGCTCAGGATGGTGGTTGATTGTGGATTGAAGGACGATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           GTGTTAGGGGACCCCAATGCACCGCGTTTCGTCTTCTGGAATGGCAAGCTCAGGCCGGTA
JMSF025J21-           GTGTTAGGGGACCCCAATGCACCGCGTTTCGTCTTCTGGAATGGCAAGCTCAGGCCGGTA
JMSF028K05-                                                                  CGGTA
                      ____________________________________________________________
consensus             GTGTTAGGGGACCCCAATGCACCGCGTTTCGTCTTCTGGAATGGCAAGCTCAGGCCGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
JMSF025J21-           CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
JMSF028K05-           CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
                      ____________________________________________________________
consensus             CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022I21-           GCTGGTTTTGGAGCCATTGGTTTTC                                   
JMSF025J21-           GCTGGTTTTGGAGCCATTGGTTTTCGCCCACCGCCCCCA                     
JMSF028K05-           GCTGGTTTTGGAGCCATTGGTTTTCGCCCACCGCCCCCAGGGCATGAGGAATCCGTGGAG
                      ____________________________________________________________
consensus             GCTGGTTTTGGAGCCATTGGTTTTCGCCCACCGCCCCCAGGGCATGAGGAATCCGTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           GAGTTTGTGCGTCGTAACCTCGGAGAAGAAGTCTTTGAGCGCTTAATAGAGCCATTTTGC
                      ____________________________________________________________
consensus             GAGTTTGTGCGTCGTAACCTCGGAGAAGAAGTCTTTGAGCGCTTAATAGAGCCATTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           TCTGGTGTATACGCTGGTGATCCATCAAAGCTGAGTATGAAAGCAGCATTTGGGAAAGTG
                      ____________________________________________________________
consensus             TCTGGTGTATACGCTGGTGATCCATCAAAGCTGAGTATGAAAGCAGCATTTGGGAAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           TGGAAGCTGGAGGAAAATGGTGGCAGCATAATTGGTGGAACCATTAAAGCACTCAAAGAG
                      ____________________________________________________________
consensus             TGGAAGCTGGAGGAAAATGGTGGCAGCATAATTGGTGGAACCATTAAAGCACTCAAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           AGATCTAAAATGCCCAAGGCTCCTCAAGATCCGCGTTTACCTAAACCGAAGGGTCAAACT
                      ____________________________________________________________
consensus             AGATCTAAAATGCCCAAGGCTCCTCAAGATCCGCGTTTACCTAAACCGAAGGGTCAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           GTAGGTTCTTTCAGGAAAGGCCTTGCAATGCTGCCCGATTCAATTTCTTCAAGGTTGGGA
                      ____________________________________________________________
consensus             GTAGGTTCTTTCAGGAAAGGCCTTGCAATGCTGCCCGATTCAATTTCTTCAAGGTTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           AGTAAAGTAAAGCTCTCATGGAAGCTTTCCAGTATTATCAAAACAGAAAATGGTGGGTTT
rJMSF022I21+                                                     CAGAAAATGGTGGGTTT
rJMSF025J21+                                                     CAGAAAATGGTGGGTTT
                      ____________________________________________________________
consensus             AGTAAAGTAAAGCTCTCATGGAAGCTTTCCAGTATTATCAAAACAGAAAATGGTGGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           AACTTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
rJMSF022I21+          AACCTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
rJMSF025J21+          AACCTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
                      ____________________________________________________________
consensus             AACCTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
rJMSF022I21+          ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
rJMSF025J21+          ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
                      ____________________________________________________________
consensus             ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028K05-           GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCC       
rJMSF022I21+          GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCCAGAAAAA
rJMSF025J21+          GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCCAGAAAAA
rJMSF028K05+                                         CTGCAGTCACCATTTCATATCCAGAAAAA
                      ____________________________________________________________
consensus             GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCCAGAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
rJMSF025J21+          GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
rJMSF028K05+          GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
                      ____________________________________________________________
consensus             GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
rJMSF025J21+          CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
rJMSF028K05+          CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
                      ____________________________________________________________
consensus             CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGC--AAAAAATACTAACA
rJMSF025J21+          GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGCAAAAAAAATACTAACA
rJMSF028K05+          GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGC-AAAAAAATACTAACA
                      ____________________________________________________________
consensus             GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGC-AAAAAAATACTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
rJMSF025J21+          TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
rJMSF006D15+                                         AACAGTTGATCGCGACATCAGAAAGATGC
rJMSF028K05+          TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
                      ____________________________________________________________
consensus             TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
rJMSF025J21+          TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
rJMSF006D15+          TTATCANGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
rJMSF028K05+          TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
                      ____________________________________________________________
consensus             TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
rJMSF025J21+          TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
rJMSF006D15+          TTCCACAGTTCTTAGTTGGTCATTNGGATACATTAAGTGNTGCAAAAACTGCAATAAGAG
rJMSF028K05+          TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
                      ____________________________________________________________
consensus             TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
rJMSF025J21+          ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
rJMSF006D15+          ATGGTGGGCTTGAAGGTNTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
rJMSF028K05+          ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
                      ____________________________________________________________
consensus             ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
rJMSF025J21+          GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
rJMSF006D15+          GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
rJMSF028K05+          GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
                      ____________________________________________________________
consensus             GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
rJMSF025J21+          TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
rJMSF006D15+          TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
rJMSF028K05+          TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
                      ____________________________________________________________
consensus             TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF022I21+          AAGAGGATCATGGTGCACGAAATGATT                                 
rJMSF025J21+          AAGAGGATCATGGTGCACGAAATGATT                                 
rJMSF006D15+          AAGAGGATCATGGTGCACGAAATGATTTAACATCGAAGATAATTTC              
rJMSF028K05+          AAGAGGATCATGGTGCACGAAATGATTTAACATTGAAGATAATTTCAGTATCAAAACCTT
                      ____________________________________________________________
consensus             AAGAGGATCATGGTGCACGAAATGATTTAACATTGAAGATAATTTCAGTATCAAAACCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028K05+          TCAGTTTATGGCAATATTTATTTGAAGTTTCCTTGTATTAGGATTCAGTACTAGCGGCCG
                      ____________________________________________________________
consensus             TCAGTTTATGGCAATATTTATTTGAAGTTTCCTTGTATTAGGATTCAGTACTAGCGGCCG