Contig 002888:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011B02Sequence263009233 (3)769002888 (3)ref|XP_004247413.1|7e-103PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF023N10Sequence655009233 (3)ref|XP_006359849.1|7e-48PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]726002888 (3)ref|XP_004247413.1|4e-97PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF028H12Sequence665009233 (3)ref|XP_006359849.1|5e-62PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]776002888 (3)ref|XP_009610859.1|3e-100PREDICTED: blue-light photoreceptor PHR2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF011B02+                                   TGAGATGAAGTTTTCTGGGGAAGCACGTTGTACCA
rJMSF023N10+                                                      GAAGCACGTTGTACCA
rJMSF028H12+              GGCGATGAAGGACGAGGGCANTGAGATGAAGTTTTCTGGGGAAGCACGTTGTACCA
                      ____________________________________________________________
consensus                 GGCGATGAAGGACGAGGGCANTGAGATGAAGTTTTCTGGGGAAGCACGTTGTACCA
 
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rJMSF011B02+          TATTGATGATTTGCCTTTTAAATTGGAAGACATGCCTACGAATTATAGTACTTTTAAGGA
rJMSF023N10+          TATTGATGATTTGCCTTTTAAATTGGAAGACATGCCTACGAATTATAGTACTTTTAAGGA
rJMSF028H12+          TATTGATGATTTGCCTTTTAAATTGGAAGACATGCCTACGAATTATAGTACTTTTAAGGA
                      ____________________________________________________________
consensus             TATTGATGATTTGCCTTTTAAATTGGAAGACATGCCTACGAATTATAGTACTTTTAAGGA
 
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rJMSF011B02+          AAAAGTTCATGGCTTGAAGATCAGAAACACCATTGAAGCACTGAATCAGCTCAGAGGATT
rJMSF023N10+          AAAAGTTCATGGCTTGAAGATCAGAAACACCATTGAAGCACTGAATCAGCTCAGAGGATT
rJMSF028H12+          AAAAGTTCATGGCTTGAAGATCAGAAACACCATTGAAGCACTGAATCAGCTCAGAGGATT
                      ____________________________________________________________
consensus             AAAAGTTCATGGCTTGAAGATCAGAAACACCATTGAAGCACTGAATCAGCTCAGAGGATT
 
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rJMSF011B02+          GCCTGCTAGAGGAAATGTGGAGCCTGGGGAGACTCCCTCTCTAGCTGATTTGGGTCTCAA
rJMSF023N10+          GCCTGCTAGAGGAAATGTGGAGCCTGGGGAGACTCCCTCTCTAGCTGATTTGGGTCTCAA
rJMSF028H12+          GCCTGCTAGAGGAAATGTGGAGCCTGGGGAGACTCCCTCTCTAGCTGATTTGGGTCTCAA
                      ____________________________________________________________
consensus             GCCTGCTAGAGGAAATGTGGAGCCTGGGGAGACTCCCTCTCTAGCTGATTTGGGTCTCAA
 
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rJMSF011B02+          TCCTAGTTCAACAGTGGGGCAGAGTGGAAAACCATCTGTTAATGCTTCCCTTGTGGGAGG
rJMSF023N10+          TCCTAGTTCAACAGTGGGGCAGAGTGGAAAACCATCTGTTAATGCTTCCCTTGTGGGAGG
rJMSF028H12+          TCCTAGTTCAACAGTGGGGCAGAGTGGAAAACCATCTGTTAATGCTTCCCTTGTGGGAGG
                      ____________________________________________________________
consensus             TCCTAGTTCAACAGTGGGGCAGAGTGGAAAACCATCTGTTAATGCTTCCCTTGTGGGAGG
 
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rJMSF011B02+          AGAGGCTGAAGCATTACAGAGAATTAGAACATTTGCAAGCGAATGCCAAGTGCAACCCAA
rJMSF023N10+          AGAGGCTGAAGCATTACAGAGAATTAGAACATTTGCAAGCGAATGCCAAGTGCAACCCAA
rJMSF028H12+          AGAGGCTGAAGCATTACAGAGAATTAGAACATTTGCAAGCGAATGCCAAGTGCAACCCAA
                      ____________________________________________________________
consensus             AGAGGCTGAAGCATTACAGAGAATTAGAACATTTGCAAGCGAATGCCAAGTGCAACCCAA
 
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rJMSF011B02+          CCGGGGAAACAAAGATGGGAGTGATAGCATATACGGTGCAAACTTTTCCTGCAAAATCTC
rJMSF023N10+          CCGGGGAAACAAAGATGGGAGTGATAGCATATACGGTGCAAACTTTTCCTGCAAAATCTC
rJMSF028H12+          CCGGGGAAACAAAGATGGGAGTGATAGCATATACGGTGCAAACTTTTCCTGCAAAATCTC
                      ____________________________________________________________
consensus             CCGGGGAAACAAAGATGGGAGTGATAGCATATACGGTGCAAACTTTTCCTGCAAAATCTC
 
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rJMSF011B02+          TCCCTGGCTTGGCATGGGCTGCATTTCCCCTCGCGCCATGTTTGAGGAGCTCAAAAAATC
rJMSF023N10+          TCCCTGGCTTGGCATGGGCTGCATTTCCCCTCGCGCCATGTTTGAGGAGCTCAAAAAATC
rJMSF028H12+          TCCCTGGCTTGGCATGGGCTGCATTTCCCCTCGCGCCATGTTTGAGGAGCTCAAAAAATC
                      ____________________________________________________________
consensus             TCCCTGGCTTGGCATGGGCTGCATTTCCCCTCGCGCCATGTTTGAGGAGCTCAAAAAATC
 
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rJMSF011B02+          CGCGTCAAGCACAATTTCTGCTTCCTCTAAAGACCCCAGTGGTGACACTGGGATGAACTG
rJMSF023N10+          CGCGTCAAGCACAATTTCTGCTTCCTCTAAAGACCCCAGTGGTGACACTGGGATGAACTG
rJMSF028H12+          CGCGTCAAGCACAATTTCTGCTTCCTCTAAAGACCCCAGTGGTGACACTGGGATGAACTG
                      ____________________________________________________________
consensus             CGCGTCAAGCACAATTTCTGCTTCCTCTAAAGACCCCAGTGGTGACACTGGGATGAACTG
 
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rJMSF011B02+          GCTAATGTATGAGCTGTTGTGGAGGGATTTCTTCAGATTCATTACCAAGAAATACAGTGA
rJMSF023N10+          GCTAATGTATGAGCTGTTGTGGAGGGATTTCTTCAGATTCATTACCAAGAAATACAGTGA
rJMSF028H12+          GCTAATGTATGAGCTGTTGTGGAGGGATTTCTTCAGATTCATTACCAAGAAATACAGTGA
                      ____________________________________________________________
consensus             GCTAATGTATGAGCTGTTGTGGAGGGATTTCTTCAGATTCATTACCAAGAAATACAGTGA
 
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rJMSF011B02+          TGTAAAACAGAACAACACTGCAGCCCCTGTGACTTCATGCACAGTAGGAGTTGCTGTCTA
rJMSF023N10+          TGTAAAACAGAACAACACTGCAGCCCCTGTGACTTCATGCACAGTAGGAGTTGCTGTCTA
rJMSF028H12+          TGTAAAACAGAACAACACTGCAGCCCCTGTGACTTCATGCACAGTAGGAGTTGCTGTCTA
                      ____________________________________________________________
consensus             TGTAAAACAGAACAACACTGCAGCCCCTGTGACTTCATGCACAGTAGGAGTTGCTGTCTA
 
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rJMSF011B02+          ATAATGAAGCATTACAGGTGGCAAGATAGAAGCACTATAAAGGGATGATTTTCTTTTGCA
rJMSF023N10+          ATAATGAAGCATTACAGGTGGCAAGATAGAAGCACTATAAAGGGATGATTTTCTTTTGCA
rJMSF028H12+          ATAATGAAGCATTACAGGTGGCAAGATAGAAGCACTATAAAGGGATGATTTTCTTTTGCA
                      ____________________________________________________________
consensus             ATAATGAAGCATTACAGGTGGCAAGATAGAAGCACTATAAAGGGATGATTTTCTTTTGCA
 
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rJMSF011B02+          GAGATGAATGTTAGAATAG                                         
rJMSF023N10+          GAGATGAATGTTAGAATAG                                         
rJMSF028H12+          GAGATGAATGTTAGAATAGAGGCTGTGTAGAGTGTTTTCTACTAGTATCCCTGCTTGTAC
                      ____________________________________________________________
consensus             GAGATGAATGTTAGAATAGAGGCTGTGTAGAGTGTTTTCTACTAGTATCCCTGCTTGTAC