| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002H08 | Sequence | 356 | 002049 (3) | ref|XP_009802572.1| | 1e-05 | PREDICTED: endoglucanase 24-like [Nicotiana sylvestris] | 686 | 002886 (3) | emb|CDO96993.1| | 4e-89 | unnamed protein product [Coffea canephora] |
| JMSF028G06 | Sequence | 679 | 002049 (3) | emb|CDO96993.1| | 6e-94 | unnamed protein product [Coffea canephora] | 759 | 002886 (3) | emb|CDO96993.1| | 2e-105 | unnamed protein product [Coffea canephora] |
| JMSF047N14 | Sequence | 680 | 002049 (3) | emb|CDO96993.1| | 1e-103 | unnamed protein product [Coffea canephora] | 767 | 002886 (3) | ref|XP_009631305.1| | 5e-108 | PREDICTED: endoglucanase 24-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF047N14+ ANGGGAACATCTATTCTTTGCAATCATATAAAGCCTCAGCAGATAGCTTCATGT
rJMSF028G06+ CTTTGCAATCATATAAAGCCTCAGCAGATAGCTTCATGT
____________________________________________________________
consensus ANGGGAACATCTATTCTTTGCAATCATATAAAGCCTCAGCAGATAGCTTCATGT
. : . : . : . : . : . :
rJMSF047N14+ GCACACTGATCCCGGAATCGCCGTCGTCCCACATCGAATACACGCCGGGCGGCCTGATTT
rJMSF002H08+ CGAATACACGCCGGGCGGCCTGATTT
rJMSF028G06+ GCACACTGATCCCGGAATCGCCGTCGTCCCACATCGAATACACGCCGGGCGGCCTGATTT
____________________________________________________________
consensus GCACACTGATCCCGGAATCGCCGTCGTCCCACATCGAATACACGCCGGGCGGCCTGATTT
. : . : . : . : . : . :
rJMSF047N14+ ACAAGCCCGGCGGCAGCAATCTGCAGCACGCAACCTTAGTGAGTCTGATGTTGTTGGTCT
rJMSF002H08+ ACAAGCCCGGCGGCAGCAATCTGCAGCACGCAACCTTAGTGAGTCTGATGTTGTTGGTCT
rJMSF028G06+ ACAAGCCCGGCGGCAGCAATCTGCAGCACGCAACCTTAGTGAGTCTGATGTTGTTGGTCT
____________________________________________________________
consensus ACAAGCCCGGCGGCAGCAATCTGCAGCACGCAACCTTAGTGAGTCTGATGTTGTTGGTCT
. : . : . : . : . : . :
rJMSF047N14+ ACGCCGCCTCCTTAGAGCGGTCGTCGCAGGCCGTGAACTGCGGCAGCGTTAGCGTCAGCC
rJMSF002H08+ ACGCCGCCTCCTTAGAGCGGTCGTCGCAGGCCGTGAACTGCGGCAGCGTTAGCGTCAGCC
rJMSF028G06+ ACGCCGCCTCCTTAGAGCGGTCGTCGCAGGCCGTGAACTGCGGCAGCGTTAGCGTCAGCC
____________________________________________________________
consensus ACGCCGCCTCCTTAGAGCGGTCGTCGCAGGCCGTGAACTGCGGCAGCGTTAGCGTCAGCC
. : . : . : . : . : . :
rJMSF047N14+ CCGCCATGCTCCGGGAAGTGGCTAAGCGGCAGGTTGATTACATCTTAGGCGACAACCCTA
rJMSF002H08+ CCGCCATGCTCCGGGAAGTGGCTAAGCGGCAGGTTGATTACATCTTAGGCGACAACCCTA
rJMSF028G06+ CCGCCATGCTCCGGGAAGTGGCTAAGCGGCAGGTTGATTACATCTTAGGCGACAACCCTA
____________________________________________________________
consensus CCGCCATGCTCCGGGAAGTGGCTAAGCGGCAGGTTGATTACATCTTAGGCGACAACCCTA
. : . : . : . : . : . :
rJMSF047N14+ AAGGAATCTCGTACATGGTCGGGTACAGTTACTACTATCCTCAACGGATTCATCACCGCG
rJMSF002H08+ AAGGAATCTCGTACATGGTCGGGTACAGTTACTACTATCCTCAACGGATTCATCACCGCG
rJMSF028G06+ AAGGAATCTCGTACATGGTCGGGTACAGTTACTACTATCCTCAACGGATTCATCACCGCG
____________________________________________________________
consensus AAGGAATCTCGTACATGGTCGGGTACAGTTACTACTATCCTCAACGGATTCATCACCGCG
. : . : . : . : . : . :
rJMSF047N14+ GCTCGTCTCTCCCCTCGACCAAGGATCATCCGCAGTTCATAGCATGCAAAGAGGGATCCG
rJMSF002H08+ GCTCGTCTCTCCCCTCGACCAAGGATCATCCGCAGTTCATAGCATGCAAAGAGGGATCCG
rJMSF028G06+ GCTCGTCTCTCCCCTCGACCAAGGATCATCCGCAGTTCATAGCATGCAAAGAGGGATCCG
____________________________________________________________
consensus GCTCGTCTCTCCCCTCGACCAAGGATCATCCGCAGTTCATAGCATGCAAAGAGGGATCCG
. : . : . : . : . : . :
rJMSF047N14+ TCTATTTCAACTCGTCGGGTCCTAACCCGAACGTGTTAGTCGGGGCGATCGTCGGCGGGC
rJMSF002H08+ TCTATTTCAACTCGTCGGGTCCTAACCCGAACGTGTTAGTCGGGGCGATCGTCGGCGGGC
rJMSF028G06+ TCTATTTCAACTCGTCGGGTCCTAACCCGAACGTGTTAGTCGGGGCGATCGTCGGCGGGC
____________________________________________________________
consensus TCTATTTCAACTCGTCGGGTCCTAACCCGAACGTGTTAGTCGGGGCGATCGTCGGCGGGC
. : . : . : . : . : . :
rJMSF047N14+ CGGGGGAGAACGATGAGTACGACGATGACCGCGACGATTTTCGGAAGTCGGAGCCGACAA
rJMSF002H08+ CGGGGGAGAACGATGAGTACGACGATGACCGCGACGATTTTCGGAAGTCGGAGCCGACAA
rJMSF028G06+ CGGGGGAGAACGATGAGTACGACGATGACCGCGACGATTTTCGGAAGTCGGAGCCGACAA
____________________________________________________________
consensus CGGGGGAGAACGATGAGTACGACGATGACCGCGACGATTTTCGGAAGTCGGAGCCGACAA
. : . : . : . : . : . :
rJMSF047N14+ CCTACATTAACGCGCCGTTCGTTGGCGCCCTTGCTTACTTTGCCGCTAATTATCCCAGTA
rJMSF002H08+ CCTACATTAACGCGCCGTTCGTTGGCGCCCTTGCTTACTTTGCCGCTAATTATCCCAGTA
rJMSF028G06+ CCTACATTAACGCGCCGTTCGTTGGCGCCCTTGCTTACTTTGCCGCTAATTATCCCAGTA
____________________________________________________________
consensus CCTACATTAACGCGCCGTTCGTTGGCGCCCTTGCTTACTTTGCCGCTAATTATCCCAGTA
. : . : . : . : . : . :
rJMSF047N14+ ATTAAGATCATCAGTAAATGGCATCTGTACAGAGTTGGTGAATTACTGATCGATTGGGTA
rJMSF002H08+ ATTAAGATCATCAGTAAATGGCATCTGTACAGAGTTGGTGAATTACTGATCGATTGGGTA
rJMSF028G06+ ATTAAGATCATCAGTAAATGGCATCTGTACAGAGTTGGTGAATTACTGATCGATTGGGTA
____________________________________________________________
consensus ATTAAGATCATCAGTAAATGGCATCTGTACAGAGTTGGTGAATTACTGATCGATTGGGTA
. : . : . : . : . : . :
rJMSF047N14+ TTTGCATTCGTGTGTGTAGGTGAACAAAAGATAGAATCTCTCACCTCTGGTAAGTCAAAG
rJMSF002H08+ TTTGCATTCATGTGTGTAGGTGAACAAAAGATAGAATCTCTCACCTCTGGTAAGTCAAAG
rJMSF028G06+ TTTGCATTCATGTGTGTAGGTGAACAAAAGATAGAATCTCTCACCTCTGGTAAGTCAAAG
____________________________________________________________
consensus TTTGCATTCATGTGTGTAGGTGAACAAAAGATAGAATCTCTCACCTCTGGTAAGTCAAAG
. : . : . : . : . : . :
rJMSF047N14+ AGGGAAGAGGAGAGTCTTTATAATTTATATGTGTAATGTAATTTTCTCAATTA
rJMSF002H08+ AGGGAAGAGGAGAGTCTTTATAATTTATATGTGTAATGTAATTTTCTCAATTA
rJMSF028G06+ AGGGAAGAGGAGAGTCTTTATAATTTATATGTGTAATGTAATTTTCTCAATTACATTATT
____________________________________________________________
consensus AGGGAAGAGGAGAGTCTTTATAATTTATATGTGTAATGTAATTTTCTCAATTACATTATT