Contig 002885:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B02Sequence346012048 (3)722002885 (2)ref|NP_001065797.2|2e-26Os11g0157000 [Oryza sativa Japonica Group] dbj|BAF27642.2| Os11g0157000 [Oryza s
JMSF028D03Sequence667012048 (3)714002885 (2)ref|NP_001065797.2|5e-23Os11g0157000 [Oryza sativa Japonica Group] dbj|BAF27642.2| Os11g0157000 [Oryza s

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003B02+ CTGCTTATGC
                      ____________________________________________________________
consensus CTGCTTATGC
 
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rJMSF003B02+ TCATTCCAGTACGGGTAAATTAAACCCGAGAGCTGTCAAATGCGTTTTCCTTGGTTATGC
rJMSF028D03+ CAGTACGGGTAAATTAAACCCGAGAGCTGTCAAATGCGTTTTCCTTGGTTATGC
                      ____________________________________________________________
consensus TCATTCCAGTACGGGTAAATTAAACCCGAGAGCTGTCAAATGCGTTTTCCTTGGTTATGC
 
. : . : . : . : . : . :
rJMSF003B02+ TTCTGAATCAAAAGGGTATCGTCTATGGTCTCCTGATTCTCAGAAAATCATTTTGAGTCG
rJMSF028D03+ TTCTGAATCAAAAGGGTATCGTCTATGGTCTACTGATTCTCAGAAAATCATTTTGAGTCG
                      ____________________________________________________________
consensus TTCTGAATCAAAAGGGTATCGTCTATGGTCTCCTGATTCTCAGAAAATCATTTTGAGTCG
 
. : . : . : . : . : . :
rJMSF003B02+ AGATATCACTTTTGATGAAAATGCACTACTTTCTTCTGGAAAAGTTCCCAGTACAGATGA
rJMSF028D03+ AGATATCACTTTTGATGAAAATGCACTACTTTCTTCTGGAAAAGTTCCCAGTACAGATGA
                      ____________________________________________________________
consensus AGATATCACTTTTGATGAAAATGCACTACTTTCTTCTGGAAAAGTTCCCAGTACAGATGA
 
. : . : . : . : . : . :
rJMSF003B02+ GACGTAGAGTACTGATGAGAAGGTGGAGTTTGAATTCAGGCGTATTGATAGTATTACTAC
rJMSF028D03+ GACGTAGAGTACTGATGAGAAGGTGGAGTTTGAATTCAGGCGTATTGATAGTATTACTAC
                      ____________________________________________________________
consensus GACGTAGAGTACTGATGAGAAGGTGGAGTTTGAATTCAGGCGTATTGATAGTATTACTAC
 
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rJMSF003B02+ CACTTATGGTAATACTAAAGATGATGCATCTACTAGCACCACACTTCTCGTCGAGCCACA
rJMSF028D03+ CACTTATGGTAATACTAAAGATGATGCATCTACTAGCACCACACTTCTCGTCGAGCCACA
                      ____________________________________________________________
consensus CACTTATGGTAATACTAAAGATGATGCATCTACTAGCACCACACTTCTCGTCGAGCCACA
 
. : . : . : . : . : . :
rJMSF003B02+ ACGAGAGTATTCCATTGCTATGGATCGTCTTAGCAGGACAATTAAAAAACCTGCTAGGTA
rJMSF028D03+ ACGAGAGTATTCCATTGCTATGGATCGTCTTAGCAGGACAATTAAAAAACCTGCTAGGTA
                      ____________________________________________________________
consensus ACGAGAGTATTCCATTGCTATGGATCGTCTTAGCAGGACAATTAAAAAACCTGCTAGGTA
 
. : . : . : . : . : . :
rJMSF003B02+ TGCTAGTGATGATGAAACCAACTTGGTTGCTTATGCTCTTTCAGTCGCATGGGAAGTTGA
rJMSF028D03+ TGCTAGTGATGATGAAACCAACTTGGTTGCTTATGCTCTTTCAGTCGCATGGGAAGTTGA
                      ____________________________________________________________
consensus TGCTAGTGATGATGAAACCAACTTGGTTGCTTATGCTCTTTCAGTCGCATGGGAAGTTGA
 
. : . : . : . : . : . :
rJMSF003B02+ TGGTGGTCCATCCTGCTATTTTGAGGCTCTTCCTATTGCTAAGTTCAAGCAGTGCTAGAG
rJMSF028D03+ TGGTGGTCCATCCTGCTATTTTGAGGCTCTTCCTATTGCTAAGTTCAAGCAGTGCTAGAG
                      ____________________________________________________________
consensus TGGTGGTCCATCCTGCTATTTTGAGGCTCTTCCTATTGCTAAGTTCAAGCAGTGCTAGAG
 
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rJMSF003B02+ TTTAGTCGGCTGTTCCAGTGGTTAATTCCACGGTGGATTAGATCCAAGGTGGAGATTGTT
rJMSF028D03+ TTTAGTCGGCTGTTCCAGTGGTTAATTCCACGGTGGATTAGATCCAAGGTGGAGATTGTT
                      ____________________________________________________________
consensus TTTAGTCGGCTGTTCCAGTGGTTAATTCCACGGTGGATTAGATCCAAGGTGGAGATTGTT
 
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rJMSF003B02+ AGGAAAATAATATATGTGGCTCAAA
rJMSF028D03+ AGGAAAATAATATATGTGGCTCAAATTTATTGTAGAAGACCCACTCAACATGTAATGCAT
                      ____________________________________________________________
consensus AGGAAAATAATATATGTGGCTCAAATTTATTGTAGAAGACCCACTCAACATGTAATGCAT
 
. : . : . : . : . : . :
rJMSF028D03+ TTGTTGTTGCCATAACTTTATCCCCCATGTAGCATGTCTGTACACGTTCTTCTACTTCAT
                      ____________________________________________________________
consensus TTGTTGTTGCCATAACTTTATCCCCCATGTAGCATGTCTGTACACGTTCTTCTACTTCAT
 
. : . : . : . : . : . :
rJMSF028D03+ GCCACTTAATTTTCTCATTTTACTTTGTATAAACAGATTACGTTTGATGCTTGAATTCAC
                      ____________________________________________________________
consensus GCCACTTAATTTTCTCATTTTACTTTGTATAAACAGATTACGTTTGATGCTTGAATTCAC