Contig 002882:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016B05Sequence102002882 (2)
JMSF027P21Sequence628011805 (2)ref|XP_009777958.1|1e-35PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]741002882 (2)ref|XP_009760514.1|3e-81PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF027P21-                                                 TAGCATTATTCAAGCAATCCT
                      ____________________________________________________________
consensus                                                    TAGCATTATTCAAGCAATCCT
 
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rJMSF027P21-          GAATATAACCAAAAACAGTTCACCCAAAAGTTATAAACAATCTAGTCATCAGAACCAGGG
                      ____________________________________________________________
consensus             GAATATAACCAAAAACAGTTCACCCAAAAGTTATAAACAATCTAGTCATCAGAACCAGGG
 
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rJMSF027P21-          GCACAGGCTTCACATAGCATAACAAAGCATTCTCTTTTGTTTTTGTTTTTGGTTTTTTGT
                      ____________________________________________________________
consensus             GCACAGGCTTCACATAGCATAACAAAGCATTCTCTTTTGTTTTTGTTTTTGGTTTTTTGT
 
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rJMCP016B05+                                                                 GGGGG
rJMSF027P21-          TTTGTTTTTGGTTTTTGTTTTTGTTTTTCTGTTTTTGTTTCTTGTTTTGTTTTATGGGGG
                      ____________________________________________________________
consensus             TTTGTTTTTGGTTTTTGTTTTTGTTTTTCTGTTTTTGTTTCTTGTTTTGTTTTATGGGGG
 
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rJMCP016B05+          GTGGGGGAGGCGCTCAAAGAGTTCTTGTTTCACGTTTCCAATGCTGTTATCTTGCAGATG
rJMSF027P21-          GTGGGGGAGGCGCTCAAAGAGTTCTTGTTTCACGTTTCCAATGCTGTTATCTTGCAGATG
                      ____________________________________________________________
consensus             GTGGGGGAGGCGCTCAAAGAGTTCTTGTTTCACGTTTCCAATGCTGTTATCTTGCAGATG
 
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rJMCP016B05+          GGACACAGATTCTTCAGTATTAACCATTTCTTTATGC                       
rJMSF027P21-          GGACACAGATTCTTCAGTATTAACCATTTCTTTATGCAATTAGTATGGAACAGATGCCCA
                      ____________________________________________________________
consensus             GGACACAGATTCTTCAGTATTAACCATTTCTTTATGCAATTAGTATGGAACAGATGCCCA
 
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rJMSF027P21-          CACTGCAATGTGCCAACGTCTTCTCCAGCTACATACTCCTCCTGGCATATACAGCATGGC
                      ____________________________________________________________
consensus             CACTGCAATGTGCCAACGTCTTCTCCAGCTACATACTCCTCCTGGCATATACAGCATGGC
 
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rJMSF027P21-          TCCACATTTGATGACAATCTTCGGCCAAGTAAGCATTCATATTTATGCTGTTTCATAGAT
                      ____________________________________________________________
consensus             TCCACATTTGATGACAATCTTCGGCCAAGTAAGCATTCATATTTATGCTGTTTCATAGAT
 
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rJMSF027P21-          CCCAAAATGGTTTCCTCACTCAACCCGGTGTTCACATTCCCTATGCGTTCTTCCAATGCC
                      ____________________________________________________________
consensus             CCCAAAATGGTTTCCTCACTCAACCCGGTGTTCACATTCCCTATGCGTTCTTCCAATGCC
 
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rJMSF027P21-          AACAGTTCCTCATAAGACATGCTGTCAACATCAAGCCTCATATCTCTATGCCTATCATGA
                      ____________________________________________________________
consensus             AACAGTTCCTCATAAGACATGCTGTCAACATCAAGCCTCATATCTCTATGCCTATCATGA
 
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rJMSF027P21-          AACTCGGCAACCCCATTAATAAACGGATCAAACATTGCATAATCCTCAGCTCGCATGTTC
                      ____________________________________________________________
consensus             AACTCGGCAACCCCATTAATAAACGGATCAAACATTGCATAATCCTCAGCTCGCATGTTC
 
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rJMSF027P21-          TCCCTTTGCATAGCATTAAGTACTTGACGAATCATTCTGTGTCTCCCTTCAATATCAGCA
                      ____________________________________________________________
consensus             TCCCTTTGCATAGCATTAAGTACTTGACGAATCATTCTGTGTCTCCCTTCAATATCAGCA
 
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rJMSF027P21-          GCTAAAGCACGCCAACTGCCGTGATCATCACCTGGGGCCTCAACTGCCCTCACAGTTGAC
                      ____________________________________________________________
consensus             GCTAAAGCACGCCAACTGCCGTGATCATCACCTGGGGCCTCAACTGCCCTCACAGTTGAC