Contig 002880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027N22Sequence547010741 (2)ref|XP_009623760.1|7e-05PREDICTED: putative mediator of RNA polymerase II transcription subunit 24 [Nic701002880 (2)gb|EYU18731.1|3e-77hypothetical protein MIMGU_mgv1a005173mg [Erythranthe guttata]
JMSF038I09Sequence653010741 (2)emb|CDP14115.1|5e-35unnamed protein product [Coffea canephora]885002880 (2)ref|XP_009799720.1|293PREDICTED: uncharacterized protein LOC104245758 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF038I09+                                                        AGTCGGCCGCTTTC
                      ____________________________________________________________
consensus                                                           AGTCGGCCGCTTTC
 
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rJMSF038I09+          GACAGGGCGGTTGTGGAGGAGAGCGAGTCGTTCTTGAAACTCGTTCACGGCGCCGGCGAA
                      ____________________________________________________________
consensus             GACAGGGCGGTTGTGGAGGAGAGCGAGTCGTTCTTGAAACTCGTTCACGGCGCCGGCGAA
 
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rJMSF038I09+          GATAGAAACTCCACCACGAGTTTCGACTCGGCCCAGTTCAAGATTTCGCGCAAGAAGGAG
                      ____________________________________________________________
consensus             GATAGAAACTCCACCACGAGTTTCGACTCGGCCCAGTTCAAGATTTCGCGCAAGAAGGAG
 
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rJMSF038I09+          AGAGAAAGCGGGGAGCCAATCTGGGGACGGAAAAGAAGAAGCAATTCCAGCGAAGAAGAA
                      ____________________________________________________________
consensus             AGAGAAAGCGGGGAGCCAATCTGGGGACGGAAAAGAAGAAGCAATTCCAGCGAAGAAGAA
 
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rJMSF038I09+          TTGGAAGGTGATTCTGAGTCGACTCGGTTGTCATACGGCTCGGTGGTGAGTTTCGACGTT
rJMSF027N22+                             CGACTCGGTTGTCATACGGCTCGGTGGTGAGTTTCGACGTT
                      ____________________________________________________________
consensus             TTGGAAGGTGATTCTGAGTCGACTCGGTTGTCATACGGCTCGGTGGTGAGTTTCGACGTT
 
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rJMSF038I09+          GACGAGCTTGACCCGGAGAATTCCTTGGCCGGGTTTCTCCACCACGTCCCAATGAGTTTA
rJMSF027N22+          GACGAGCTTGACCCGGAGAATTCCTTGGCCGGGTTTCTCCACCACGTCCCAATGAGTTTA
                      ____________________________________________________________
consensus             GACGAGCTTGACCCGGAGAATTCCTTGGCCGGGTTTCTCCACCACGTCCCAATGAGTTTA
 
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rJMSF038I09+          AGGAGATGGGCTTGTTACCCTATGCTACTCGGCCGACTCAGAAGAAATTTCAAGCACTTA
rJMSF027N22+          AGGAGATGGGCTTGTTACCCTATGCTACTCGGCCGACTCAGAAGAAATTTCAAGCACTTA
                      ____________________________________________________________
consensus             AGGAGATGGGCTTGTTACCCTATGCTACTCGGCCGACTCAGAAGAAATTTCAAGCACTTA
 
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rJMSF038I09+          ATCTTAGTGGACGCAAAAGAGCTTCTCCTTCTCGGCGACCCACTGAGTCGACTCAGGAGC
rJMSF027N22+          ATCTTAGTGGACGCAAAAGAGCTTCTCCTTCTCGGCGACCCACTGAGTCGACTCAGGAGC
                      ____________________________________________________________
consensus             ATCTTAGTGGACGCAAAAGAGCTTCTCCTTCTCGGCGACCCACTGAGTCGACTCAGGAGC
 
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rJMSF038I09+          CGGACCCCCGAGTCAGTGCACTTATCAACCCTCACCCCGCCGGCGCACGGCCGGAAAACC
rJMSF027N22+          CGGACCCCCGAGTCAGTGCACTTATCAACCCTCACCCCGCCGGCGCACGGCCGGAAAACC
                      ____________________________________________________________
consensus             CGGACCCCCGAGTCAGTGCACTTATCAACCCTCACCCCGCCGGCGCACGGCCGGAAAACC
 
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rJMSF038I09+          CACCAGAAACCCGTCAGCCCGGCAATCGTAATGGGCGGATCAAGAGGGGTCCGGAGATTA
rJMSF027N22+          CACCAGAAACCCGTCAGCCCGGCAATCGTAATGGGCGGATCAAGAGGGGTCCGGAGATTA
                      ____________________________________________________________
consensus             CACCAGAAACCCGTCAGCCCGGCAATCGTAATGGGCGGATCAAGAGGGGTCCGGAGATTA
 
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rJMSF038I09+          TCAAACGCGGTGCTAACGGAGATCGTCCGGGCGGCAATGCAACACAAGAAGAAGAACTCG
rJMSF027N22+          TCAAACGCGGTGCTAACGGAGATCGTCCGGGCGGCAATGCAACACAAGAAGAAGAACTCG
                      ____________________________________________________________
consensus             TCAAACGCGGTGCTAACGGAGATCGTCCGGGCGGCAATGCAACACAAGAAGAAGAACTCG
 
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rJMSF038I09+          GTCAACGAGTCGGGACTCCTAAACCAACTCGTGGGCAATGAGTTCGTACTGAAGAACATA
rJMSF027N22+          GTCAACGAGTCGGGACTCCTAAACCAACTCGTGGGCAATGAGTTCGTACTGAAGAACATA
                      ____________________________________________________________
consensus             GTCAACGAGTCGGGACTCCTAAACCAACTCGTGGGCAATGAGTTCGTACTGAAGAACATA
 
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rJMSF038I09+          AATTTGATTGTGTCGGCCGAGTCGATACCGGAACTGAGTTCACTCACTGGGTTGAATTCA
rJMSF027N22+          AATTTGATTGTGTCGGCCGAGTCGATACCGGAACTGAGTTCACTCACTGGGTTGAATTCA
                      ____________________________________________________________
consensus             AATTTGATTGTGTCGGCCGAGTCGATACCGGAACTGAGTTCACTCACTGGGTTGAATTCA
 
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rJMSF038I09+          AGAACAGGTTCTTCCTCATCCACATCAAATTTAGCACTGGTTAGGCGTGGCAGTAGTAAT
rJMSF027N22+          AGAACAGGTTCTTCCTCATCCACATCAAATTTAGCACTGGTTAGGCGTGGCAGTAGTAAT
                      ____________________________________________________________
consensus             AGAACAGGTTCTTCCTCATCCACATCAAATTTAGCACTGGTTAGGCGTGGCAGTAGTAAT
 
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rJMSF038I09+          GGTGATGGGAGTTCTTCAATTTTGAAATATTTATGTTCATTTTCTTTAGATTCTGCTGTT
rJMSF027N22+          GGTGATGGGAGTTCTTCAATTTTGAAATATTTATGTTCATTTTCTTTAGATTCTGCTGTT
                      ____________________________________________________________
consensus             GGTGATGGGAGTTCTTCAATTTTGAAATATTTATGTTCATTTTCTTTAGATTCTGCTGTT
 
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rJMSF038I09+          TATAGTGACTGTTAGTACAC                                        
rJMSF027N22+          TATAGTGACTGTTAGTACACAAGGAATAATTACAGTTACCACACGCACATTATTAAAAAA
                      ____________________________________________________________
consensus             TATAGTGACTGTTAGTACACAAGGAATAATTACAGTTACCACACGCACATTATTAAAAAA