Contig 002878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024C13Sequence692007917 (4)ref|XP_009795620.1|3e-101PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r738002878 (2)ref|XP_011042682.1|2e-64PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Populus euphratica
JMSF027I10Sequence609007917 (4)ref|XP_009795620.1|2e-69PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r730002878 (2)ref|XP_011042682.1|2e-53PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Populus euphratica

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+                                                TGGATGGGCATCCACCTCTAGG
                      ____________________________________________________________
consensus                                                   TGGATGGGCATCCACCTCTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          TTGGCAGGAAACTGCAGCTTACCTTGTATTACCTGTACTCTTGGTGGTCTCTCAGTTTGT
rJMSF027I10+                                                            CTCAGTTTGT
                      ____________________________________________________________
consensus             TTGGCAGGAAACTGCAGCTTACCTTGTATTACCTGTACTCTTGGTGGTCTCTCAGTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          TTCAATGGAGATAATGAAGCCTCCCGAAACAGATGATCCAAATCAAAAGAACACACTTCT
rJMSF027I10+          TTCAATGGAGATAATGAAGCCTCCCGAAGCAGATGATCCAAATCAAAAGAACACACTTCT
                      ____________________________________________________________
consensus             TTCAATGGAGATAATGAAGCCTCCCGAAGCAGATGATCCAAATCAAAAGAACACACTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          TGTCTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTCTCTGTCCCATCTGGTTT
rJMSF027I10+          TGTCTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTCTCTGTCCCATCTGGTTT
                      ____________________________________________________________
consensus             TGTCTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTCTCTGTCCCATCTGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          AACAATTTACTGGCTCACTAATAATGTGCTGAGCACCGCACAGCAGGTTTGGTTGCGCAA
rJMSF027I10+          AACAATTTACTGGCTCACTAATAATGTGCTGAGCACCGCACAGCAGGTTTGGTTGCGCAA
                      ____________________________________________________________
consensus             AACAATTTACTGGCTCACTAATAATGTGCTGAGCACCGCACAGCAGGTTTGGTTGCGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          ATTAGGTGGTGCAAAACCTGTTGTGACTGAAAATGCAAGTGGCATAATCAGTGCTGGGAA
rJMSF027I10+          ATTAGGTGGTGCAAAACCTGTTGTGACTGAAAATGCAAGTGGCATAATCAGTGCTGGGAA
                      ____________________________________________________________
consensus             ATTAGGTGGTGCAAAACCTGTTGTGACTGAAAATGCAAGTGGCATAATCAGTGCTGGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          AGCAAAAAGAACAGCTGTTCAACCATCGCAGACTGGGGATAGATTTAGGCAGTTGAAGGA
rJMSF027I10+          AGCAAAAAGAACAGCTGTTCAACCATCGCAGACTGGGGATAGATTTAGGCAGTTGAAGGA
                      ____________________________________________________________
consensus             AGCAAAAAGAACAGCTGTTCAACCATCGCAGACTGGGGATAGATTTAGGCAGTTGAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          AGAAGAGAAGAAAAAGTCAAGTAAGGCACTATCTGCAGCGCAAGGACAGATATCAGCTTC
rJMSF027I10+          AGAAGAGAAGAAAAAGTCAAGTAAGGCACTATCTGCAGCGCAAGGACAGATATCAGCTTC
                      ____________________________________________________________
consensus             AGAAGAGAAGAAAAAGTCAAGTAAGGCACTATCTGCAGCGCAAGGACAGATATCAGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          TGCATCTGATTCAGAGGATGAGTCAGAGGAAAGCGATTCAAAGGATGAGGAGGTTCTTGA
rJMSF027I10+          TGCATCTGATTCAGAGGATGAGTCAGAGGAAAGCGATTCAAAGGATGAGGAGGTTCTTGA
                      ____________________________________________________________
consensus             TGCATCTGATTCAGAGGATGAGTCAGAGGAAAGCGATTCAAAGGATGAGGAGGTTCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          AGAGGCTTACACTTCTGGCAACAGTAAAAAAGTTCCAGACTACTCTGGGCCAAGGAGGAG
rJMSF027I10+          AGAGGCTTACACTTCTGGCAACAGTAAAAAAGTTCCAGACTACTCTGGGCCAAGGAGGAG
                      ____________________________________________________________
consensus             AGAGGCTTACACTTCTGGCAACAGTAAAAAAGTTCCAGACTACTCTGGGCCAAGGAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          CAAACGATCAAAGAGAAAGCGTGCGGTATGAAAATGATATAGTCACTTTTTTTTTAACTC
rJMSF027I10+          CAAACGATCAAAGAGAAAGCGTGCGGTATGAAAATGATATAGTCACTTTTTTTTTAACTC
                      ____________________________________________________________
consensus             CAAACGATCAAAGAGAAAGCGTGCGGTATGAAAATGATATAGTCACTTTTTTTTTAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          AGATTTTTACTAGTATACTTGAACAGATTGTATCCTAGTTATAGCGGCCATTTTCACATC
rJMSF027I10+          AGATTTTTACTAGTATACTTGAACAGATTGTATCCTAGTTATAGCGGCCATTTTCACATC
                      ____________________________________________________________
consensus             AGATTTTTACTAGTATACTTGAACAGATTGTATCCTAGTTATAGCGGCCATTTTCACATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C13+          GGTCATCTATTTGTGATATAGCTACCATTCATCGAACTCATCTGTCTGTAGGGCAT    
rJMSF027I10+          GGTCATCTATTTGTGATATAGCTACCATTCATCGAACTCATCTGTCTGTAGGGCATATCC
                      ____________________________________________________________
consensus             GGTCATCTATTTGTGATATAGCTACCATTCATCGAACTCATCTGTCTGTAGGGCATATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027I10+          TACATCCATCTCTTATTTAGTAGTATCTTTCTGCTCTTCAACAAAGATGAAAACGAAAGT
                      ____________________________________________________________
consensus             TACATCCATCTCTTATTTAGTAGTATCTTTCTGCTCTTCAACAAAGATGAAAACGAAAGT